CN185811
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16 Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = -1 Query: 420 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 779 L LLD ++F ++ R EL + L + + IH ++Q +R+ + FKEG +LVATD+ RG+DI V V N+D+P ++Y+HR+GR GR G G+A+TF++ S Sbjct: 232 LTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = -1 Query: 363 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 791 KN L LL+ +IF +V + +L F +I +H +SQ RL F+ ++ ILVATD+ RG+DI V++V N+D+P + TY+HRVGR R G G+AI+FV+ D ++ +++ K+LPE Sbjct: 272 KNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ-YDVEVWLRIEHALS---KKLPE 410
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = -1 Query: 372 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 743 ++IF + L +L + +FP++ +HS M Q+ER FK RIL+ATD+ RG+DI V +VIN++ P Y+HRVGR R G +G AIT V+ D +++ ++ + + ++E Sbjct: 251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ-YDIHLVHAIEEQIKKKLEE 373
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 47/153 (30.72%), Postives = 85/153 (55.56%), Query Frame = -1 Query: 354 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 791 K + L ++ + Q +IF ++ A L +++ + ++ E+R + + F++G +++L+ T++ RGID+++V IV+N+D+P +TYLHR+GR GRFG KGLA + +L ++Q F IK+L PE +D Sbjct: 325 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFNSSIKQLDPEDMD 476
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -1 Query: 441 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 749 ++V++F + E+ L +P++ IH Q ER K F++G+ I+VATD+ RGID++ + V+NYDMP + + Y+HR+GR GR G G AI+F Sbjct: 364 SKVLVFASTKRTCDEVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISF 466
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -1 Query: 426 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 749 N++++F + E+ L +P++ IH Q ER F++G I+VATD+ RGID++ + VINYDMP + + Y+HR+GR GR G G AI+F + + Sbjct: 375 NKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGN 482
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16 Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = -1 Query: 435 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 791 KN L LL+ ++IF ++ + + L F ++ +H ++Q +RL FK G IL+ATD+ RG+DI V++VINYD+P + Y+HRVGR R G G +I+ V+ Sbjct: 297 KNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVT 415
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16 Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = -1 Query: 435 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 791 KN L LL+ +++F ++ + L F ++ +H ++Q +RL FK G IL+ATD+ RG+DI V++VINYD+P + Y+HRVGR R G G +I+ V+ Sbjct: 290 KNTFLIHLLNEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVT 408
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16 Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1 Query: 435 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 770 LL+ ++F ++V+ L LL F SI +H +SQ RL F+ ++ ILVATD+ RG+DI V++V+N+D+P + TY+HRVGR R G G A + V+ Sbjct: 293 LLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVT 404
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -1 Query: 441 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 740 +IFV+S+ RA EL K LV +H G ++ +R K F+ G +LV T+++ RG+D V +VINYD P + +Y+HR+GR GR G G AITF Sbjct: 426 LIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITF 525 The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bpback to top |