CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = -1
Query:  420 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 779
            L  LLD       ++F ++  R  EL + L    + +  IH  ++Q +R+   + FKEG   +LVATD+  RG+DI  V  V N+D+P   ++Y+HR+GR GR G  G+A+TF++    S
Sbjct:  232 LTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS 351          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = -1
Query:  363 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 791
            KN  L  LL+       +IF  +V     +  +L    F +I +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V N+D+P  + TY+HRVGR  R G  G+AI+FV+   D ++  +++       K+LPE
Sbjct:  272 KNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ-YDVEVWLRIEHALS---KKLPE 410          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 44/124 (35.48%), Postives = 72/124 (58.06%), Query Frame = -1
Query:  372 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 743
            ++IF  +      L  +L + +FP++ +HS M Q+ER      FK    RIL+ATD+  RG+DI  V +VIN++ P     Y+HRVGR  R G +G AIT V+   D  +++ ++ + +  ++E
Sbjct:  251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ-YDIHLVHAIEEQIKKKLEE 373          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 47/153 (30.72%), Postives = 85/153 (55.56%), Query Frame = -1
Query:  354 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 791
            K + L ++   +   Q +IF ++   A  L   +++       +   ++ E+R +  + F++G +++L+ T++  RGID+++V IV+N+D+P         +TYLHR+GR GRFG KGLA   +       +L ++Q  F   IK+L PE +D
Sbjct:  325 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFNSSIKQLDPEDMD 476          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  441 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 749
            ++V++F  +     E+   L    +P++ IH    Q ER    K F++G+  I+VATD+  RGID++ +  V+NYDMP + + Y+HR+GR GR G  G AI+F
Sbjct:  364 SKVLVFASTKRTCDEVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGSHSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISF 466          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  426 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 749
            N++++F  +     E+   L    +P++ IH    Q ER      F++G   I+VATD+  RGID++ +  VINYDMP + + Y+HR+GR GR G  G AI+F +  +
Sbjct:  375 NKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGN 482          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  435 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 791
            KN  L  LL+      ++IF ++ +     + L     F ++ +H  ++Q +RL     FK G   IL+ATD+  RG+DI  V++VINYD+P  +  Y+HRVGR  R G  G +I+ V+
Sbjct:  297 KNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVT 415          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  435 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 791
            KN  L  LL+      +++F ++ +       L     F ++ +H  ++Q +RL     FK G   IL+ATD+  RG+DI  V++VINYD+P  +  Y+HRVGR  R G  G +I+ V+
Sbjct:  290 KNTFLIHLLNEFMGKSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVT 408          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: RRP3_AJECN (ATP-dependent rRNA helicase RRP3 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  435 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 770
            LL+       ++F ++V+    L  LL    F SI +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G A + V+
Sbjct:  293 LLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVT 404          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: ROK1_CRYNE (ATP-dependent RNA helicase ROK1 OS=Cryptococcus neoformans GN=ROK1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  441 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 740
            +IFV+S+ RA EL K LV        +H G ++ +R    K F+ G   +LV T+++ RG+D   V +VINYD P +  +Y+HR+GR GR G  G AITF
Sbjct:  426 LIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYDFPQTVPSYIHRIGRTGRAGRPGKAITF 525          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSHA_BACSU1.645e-1636.67DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
RRP3_EMENI2.149e-1635.66ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
DDX49_HUMAN2.149e-1635.48Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DDX25_RAT2.149e-1630.72ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DBP2_LODEL2.149e-1638.83ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DBP2_CANAL2.149e-1637.04ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
RRP3_PICST2.807e-1636.13ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
RRP3_PICGU2.807e-1635.29ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]
RRP3_AJECN2.807e-1638.39ATP-dependent rRNA helicase RRP3 OS=Ajellomyces ca... [more]
ROK1_CRYNE2.807e-1643.00ATP-dependent RNA helicase ROK1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
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