CN185811

Overview
NameCN185811
Unique NameCN185811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DDX20_HUMAN (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.704e-26
Identity = 55/145 (37.93%), Postives = 88/145 (60.69%), Query Frame = -1
Query:  357 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 791
            K + L +L   + FNQ ++F    SRA  L  +L    FP+ CI   M+Q +RL      K  + R+L++TDL  RGID E+VN+V+N D+P   +TY+HR+GRAGRFGT GL +T+     + +++ ++  +  +++  LP+ I
Sbjct:  296 KTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI 440          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.137e-25
Identity = 60/147 (40.82%), Postives = 87/147 (59.18%), Query Frame = -1
Query:  339 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 779
            LN L   L  NQ +IF  S  R   L K + E  +    IHS M+Q  R   +  F++GN R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  G+AI  + +  D   L +++      I+ +P+ +D   Y+
Sbjct:  271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLI-TYEDRHTLRRIEQELRTRIEPIPKTVDPKLYV 416          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.485e-25
Identity = 54/138 (39.13%), Postives = 90/138 (65.22%), Query Frame = -1
Query:  366 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 779
            L D+ D+L   Q VIF  +  +   L++ L++ NF  + +H  M QEER      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  256 LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.485e-25
Identity = 54/138 (39.13%), Postives = 90/138 (65.22%), Query Frame = -1
Query:  366 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 779
            L D+ D+L   Q VIF  +  +   L++ L++ NF  + +H  M QEER      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  256 LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.485e-25
Identity = 55/143 (38.46%), Postives = 90/143 (62.94%), Query Frame = -1
Query:  351 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 779
            L DL D+L   Q VIF  +  +   L+  L++ NF    IH  M Q++R      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F+ +  +   L  ++  + + IK +P  ID+
Sbjct:  255 LCDLYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFI-TREEVTKLKSIEKHYSIKIKPMPADIDS 396          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = -1
Query:  339 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 779
            LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I+ +P  ID S Y+
Sbjct:  262 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIQAIPATIDKSLYV 407          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = -1
Query:  357 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 779
            L DL D L   Q VIF  +  +  +L + +   NF    +H  M Q +R    K F+ G+ R+L+ TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F++   D  IL  ++  +   I+E+P  I
Sbjct:  260 LCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITD-DDRRILKDIEQFYHTTIEEMPANI 399          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = -1
Query:  357 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 779
            L DL D++   Q VIF  + S+   L   L   NF    IH+ + Q +R T    F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-QDVGMMREIEKFYSTQIEEMPADI 392          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -1
Query:  339 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 779
            LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  274 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
BLAST of CN185811 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = -1
Query:  339 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 779
            LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  274 LNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
The following BLAST results are available for this feature:
BLAST of CN185811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX20_HUMAN8.704e-2637.93Probable ATP-dependent RNA helicase DDX20 OS=Homo ... [more]
CGH1_CAEEL1.137e-2540.82ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
FAL1_YEAST1.485e-2539.13ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS71.485e-2539.13ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_ASHGO1.485e-2538.46ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
DHH1_VANPO1.939e-2540.82ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
IF4A_DROME2.533e-2539.72Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_DEBHA3.308e-2540.43ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
DHH1_YEAST3.308e-2540.82ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS73.308e-2540.82ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185811 ID=CN185811; Name=CN185811; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATCCATAGTGCAA
TAAAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAA
TAACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAAT
CCCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATC
TGACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAA
GAAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCA
AATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGA
TGTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCT
GAACCTGATTGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATT
GCAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATA
AGTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCT
CAATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTG
TTCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACAT
GCCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGT
TTAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTA
AAGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTT
back to top