CN185805

Overview
NameCN185805
Unique NameCN185805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_PICGU (Probable proteasome subunit beta type-2 OS=Pichia guilliermondii GN=PRO2 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.446e-37
Identity = 82/191 (42.93%), Postives = 120/191 (62.83%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAR 608
            M+ V G+  +  T++    +A   I V K  +DK   L+SH L+A SGE GD VQF E+IQ N  LY  R N   L+  A A+F R +LAT++R + PY VN+LLAGYD  TG PSL +IDY+ T  ++  AA GY  ++  S++D+H+  GM+ E+ +DL+ KCI E+ +R+ +      IK+VDK+G +
Sbjct:    1 MDIVLGIRVEDCTLVATSKAATRGISVLKDTDDKTRQLNSHNLMAYSGEAGDTVQFAEYIQANTQLYTMRENDTELSPKATASFVRNQLATSIRSRKPYQVNVLLAGYDTNTGKPSLNWIDYLGTQVELPYAAHGYAGFYCTSLLDKHYKKGMNFEDGLDLLKKCIKELETRMPIDFKGCYIKVVDKEGIK 191          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.142e-35
Identity = 84/188 (44.68%), Postives = 114/188 (60.64%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 602
            MEC FG+ G  + IL +D  A  SI+  KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R + PY VN+LL G+D  T  P LY+IDY+ T   V  AA G G Y SLS MD+ ++  M  +E VDL+ KCI E   RL +   +F   ++DK+G
Sbjct:    1 MECSFGITGKDYVILASDMGAGRSIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRKCIDETEKRLTI-KFDFNCILIDKNG 187          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 75/190 (39.47%), Postives = 116/190 (61.05%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSP-YMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 611
            ME + G+ G  F +L +DT    S++  K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R +  Y V +LLAGYD   GP L+YID       ++ A  G+GS F  S++ R+++S +S E+A  L+ KC+LEI+ RL++   NF + +VD  G R+
Sbjct:    3 METILGIKGPDFVMLASDTMQAKSLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRK 192          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 72/191 (37.70%), Postives = 112/191 (58.64%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 611
            M+ + G+      IL +  +    I V K ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S++D H+   M+ EE +DL+  C+ E+  R+ +     ++KIVDKDG R+
Sbjct:    1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.569e-28
Identity = 74/188 (39.36%), Postives = 108/188 (57.45%), Query Frame = 3
Query:   72 DGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGYDKE--------TGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 602
            D   +  A  +A + I +    EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+D          TG  LYY+DY+ TL +V     GYG+ F  +M+DR +   ++ +E V+L+ KC  E+  R+VV+   F+ K V KDG
Sbjct:   12 DFVLVAAAGLNAFYYIKI-TDTEDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQEGVELMQKCCDEVNKRVVVSNNTFICKAVPKDG 198          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 51/186 (27.42%), Postives = 99/186 (53.23%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 602
            M+   G+ G  F I+ ADT    SILV K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF   ++DR +   ++++ A+ ++ KC+  ++ RL++    F++KIV  DG
Sbjct:    1 MDSSIGIKGRNFAIVAADTKISSSILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEK-YDLWSVDKYGAISSVPFCASGYAAYFVYGILDREYSEDITIDAALSIMQKCVNLLKERLMINLEGFMVKIVTDDG 185          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSB2_CAEEL (Proteasome subunit beta type-2 OS=Caenorhabditis elegans GN=pbs-4 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   45 MECVFGLVGDGFTILVADTSA-VHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSP-YMVNILLAGYD-KETGPSLYYIDYIAT-LHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 611
            M  + G+  + + IL AD +   +  ++  S  DK   L     +   GE GD  QF ++ ++N+ LY  RNG  ++ + A +F R  +A  LR    Y V++L+ GYD KE    L  +DY+A  L +      G+   F  ++MDR +   M+  E + L++KCI E + R V   P + + I+DK G R+
Sbjct:    1 MHFLVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKVVIIDKKGYRK 193          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = 3
Query:   60 GLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESVK 635
            GLV     +L ADT A    +++  N  KI  +D H  IA +G+ GD +     ++   +LY+   G  ++  A A      +    +  PY+   L+ GYD++  P L+ +D +  + + + AA G G  F+ S++D  +   MSV + + L  K I     R V      ++  + KDG +EY   E  K
Sbjct:   15 GLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLL-ANILNGSKYFPYLGWFLVGGYDEK--PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGAELEK 203          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 47/184 (25.54%), Postives = 86/184 (46.74%), Query Frame = 3
Query:   60 GLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 611
            G+V     +L AD  A    +++  N  KI  +D H  IA +G+ GD +     ++    LY  ++G  ++  A A      +    +  PY+   L+ GYD++  P LY +D +  + +   A  G G  F+ S++D  +   +++EE + L  K I     R V +    ++  + K+G +E
Sbjct:   15 GIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLL-ANIMNGAKYFPYLAWFLVGGYDEK--PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKE 195          
BLAST of CN185805 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 48/184 (26.09%), Postives = 85/184 (46.20%), Query Frame = 3
Query:   60 GLVGDGFTILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 611
            G+V     +L AD  A    +V+  N  KI  +D H  IA +G+ GD +     ++    LY  ++G  ++  A A      L  A R  PY+   L+ G+D++  P LY +D +  + +    A G G  F+ S++D  +   + V E + +  + I     R V +    ++  + ++G RE
Sbjct:   15 GIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGA-RMLPYLAWFLVGGFDEK--PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRE 195          
The following BLAST results are available for this feature:
BLAST of CN185805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PSB2_PICGU1.446e-3742.93Probable proteasome subunit beta type-2 OS=Pichia ... [more]
PSB2_CRYNE5.142e-3544.68Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_DROME1.145e-3439.47Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_YEAST3.333e-3437.70Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_TRYBB3.569e-2839.36Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_ENCCU7.969e-2027.42Probable proteasome subunit beta type-2 OS=Encepha... [more]
PSB2_CAEEL3.955e-1931.61Proteasome subunit beta type-2 OS=Caenorhabditis e... [more]
PSMB_PYRFU2.653e-1528.13Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO1.115e-1325.54Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB9.436e-1326.09Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185805 ID=CN185805; Name=CN185805; organism=Citrus sinensis; type=EST; length=723bp
AGTATCAAATCAAAACAGATCCGACAACAACAGAACAGTAAGGAATGGAG
TGCGTATTTGGTCTTGTCGGCGACGGCTTCACAATCTTAGTGGCCGACAC
GTCGGCAGTCCACAGTATCTTGGTTCATAAATCGAACGAGGACAAGATCA
TGGTCCTCGACTCTCACAAACTCATCGCCGCCAGTGGCGAACCCGGTGAC
CGTGTTCAATTTACGGAGTTCATTCAGAAGAATGTGTCGTTGTATCAATT
TCGTAACGGAATTCCATTGACTACTGCTGCGGCGGCGAACTTTACCCGAG
GAGAGCTTGCTACTGCTCTGAGAAAGAGCCCTTACATGGTTAACATCCTT
CTAGCTGGGTATGACAAGGAGACAGGACCATCTCTCTACTACATTGACTA
CATTGCAACCCTTCACAAAGTTGATAAGGCAGCTTTTGGTTATGGATCCT
ATTTTTCGCTCTCCATGATGGACCGACATTTCCACAGTGGCATGTCAGTT
GAAGAAGCTGTAGACTTGGTTGATAAGTGCATACTGGAGATTCGATCCAG
GCTGGTGGTGGCACCACCAAACTTTGTCATCAAGATTGTCGATAAGGATG
GAGCACGGGAGTATGCTTGGCGTGAATCTGTCAAGGACACCCCTGTTTCT
TCAGCATGAGGTGGTCTGAATCTGAGTCGGACTTATTGGTATAATGTTAT
ATTTGACTGCTCAAAAACTGTTT
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