CN185804

Overview
NameCN185804
Unique NameCN185804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.245e-34
Identity = 75/160 (46.88%), Postives = 105/160 (65.62%), Query Frame = -3
Query:  261 KSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKET-GPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 734
            K+++DK   L+ H L+A SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF RGELAT+LR + PY VN+LL G D  T  PSLY++DY+A+L KV  AA GY  Y+ LS++D+H H  +++ + + L++ C  E++ RL +      +K V KDG
Sbjct:   29 KASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLLLGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSILDKHHHPDITLHQGIKLLNLCTDELKRRLPIDFKGMTVKAVTKDG 188          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_YEAST (Proteasome component C11 OS=Saccharomyces cerevisiae GN=PRE1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 68/167 (40.72%), Postives = 103/167 (61.68%), Query Frame = -3
Query:  252 ILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 746
            I V K ++DK   L  H L++ +GE GD VQF E+IQ N+ LY  R    L+  A ++F R ELA ++R + PY VN+L+ GYDK+   P LY IDY+ T  ++   A GY  +++ S++D H+   M+ EE +DL+  C+ E+  R+ +     ++KIVDKDG R+
Sbjct:   25 ISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_DROME (Probable proteasome subunit beta type-2 OS=Drosophila melanogaster GN=Prosbeta4R2 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 67/167 (40.12%), Postives = 104/167 (62.28%), Query Frame = -3
Query:  252 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSP-YMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 749
            S++  K ++ KI  L    ++A  G+ GD +QFT+FI KN+ LY+  +G  L+  +AA+FTR  LA  +R +  Y V +LLAGYD   GP L+YID       ++ A  G+GS F  S++ R+++S +S E+A  L+ KC+LEI+ RL++   NF + +VD  G R+
Sbjct:   26 SLVFMKDDQSKIHRLSDFNMMATVGDGGDTIQFTDFISKNLHLYKISHGYHLSAKSAAHFTRKTLADYIRTNTRYQVAMLLAGYDAVEGPDLHYIDSYGAAQSINHAGHGWGSMFCGSILQRYWNSKLSQEDAYSLMKKCVLEIQRRLIINQRNFEVYVVDSKGMRK 192          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_CRYNE (Probable proteasome subunit beta type-2 OS=Cryptococcus neoformans GN=CPR1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = -3
Query:  261 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 749
            SI+  KS+E+K+  L  H  +A SGEPGD   F E+I++N+ LY  RN  PL   AA+ + R  LA A+R + PY VN+LL G+D  T  P LY+IDY+ T   V  AA G G Y SLS MD+ ++  M  +E VDL+ KCI E   RL +   +F   ++DK+G
Sbjct:   24 SIVRMKSDENKLKTLGPHLAMAFSGEPGDTNNFAEYIERNMRLYNIRNHFPLLPPAASAWVRRTLAEAIRSRHPYAVNLLLGGFDTTTSKPHLYWIDYLGTKAIVPYAAHGMGVYVSLSTMDKWWYEDMDKKEGVDLLRKCIDETEKRLTI-KFDFNCILIDKNG 187          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_TRYBB (Proteasome subunit beta type-2 OS=Trypanosoma brucei brucei GN=PSB4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.068e-28
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -3
Query:  261 EDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFR-NGIPLTTAAAANFTRGELATALRKSP--YMVNILLAGYDKE--------TGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 725
            EDKI  LDSHK++A +GE G R  F E+++ N++L + R +G  ++T A A+F R  LA ALR     Y VN LLAG+D          TG  LYY+DY+ TL +V     GYG+ F  +M+DR +   ++ +E V+L+ KC  E+  R+VV+   F+ K V KDG
Sbjct:   33 EDKITELDSHKVVACAGENGPRTHFVEYVKCNMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATGAHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQEGVELMQKCCDEVNKRVVVSNNTFICKAVPKDG 198          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_CAEEL (Proteasome subunit beta type-2 OS=Caenorhabditis elegans GN=pbs-4 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 55/170 (32.35%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  252 HSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSP-YMVNILLAGYD-KETGPSLYYIDYIAT-LHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGARE 752
            +  ++  S  DK   L     +   GE GD  QF ++ ++N+ LY  RNG  ++ + A +F R  +A  LR    Y V++L+ GYD KE    L  +DY+A  L +      G+   F  ++MDR +   M+  E + L++KCI E + R V   P + + I+DK G R+
Sbjct:   24 YGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKVVIIDKKGYRK 193          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSB2_ENCCU (Probable proteasome subunit beta type-2 OS=Encephalitozoon cuniculi GN=PRE1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 43/163 (26.38%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  261 SILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDG 749
            SILV K N +K  V+    ++A +G  GD  +   ++ ++    + +NGI L+ +  A+  + ++  +LR+    ++ ++AG   E    L+ +D    +  V   A GY +YF   ++DR +   ++++ A+ ++ KC+  ++ RL++    F++KIV  DG
Sbjct:   24 SILVVKENHEKFQVIKDRIVMAMTGNQGDAFRTMLYVSESALYEEIQNGIELSPSVLAHMIQNKVHESLRRRQLDISSIVAGRGPEKY-DLWSVDKYGAISSVPFCASGYAAYFVYGILDREYSEDITIDAALSIMQKCVNLLKERLMINLEGFMVKIVTDDG 185          
BLAST of CN185804 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 46/172 (26.74%), Postives = 81/172 (47.09%), Query Frame = -3
Query:  228 LVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSMMDRHFHSGMSVEEAVDLVDKCILEIRSRLVVAPPNFVIKIVDKDGAREYAWRESVK 743
            +++  N  KI  +D H  IA +G+ GD +     ++   +LY+   G  ++  A A      +    +  PY+   L+ GYD++  P L+ +D +  + + + AA G G  F+ S++D  +   MSV + + L  K I     R V      ++  + KDG +EY   E  K
Sbjct:   35 IIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLL-ANILNGSKYFPYLGWFLVGGYDEK--PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRDVFTGDGLLVVTITKDGYKEYRGAELEK 203          
The following BLAST results are available for this feature:
BLAST of CN185804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PSB2_NEUCR1.245e-3446.88Probable proteasome subunit beta type-2 OS=Neurosp... [more]
PSB2_YEAST3.392e-3240.72Proteasome component C11 OS=Saccharomyces cerevisi... [more]
PSB2_DROME9.236e-3040.12Probable proteasome subunit beta type-2 OS=Drosoph... [more]
PSB2_CRYNE7.819e-2944.85Probable proteasome subunit beta type-2 OS=Cryptoc... [more]
PSB2_TRYBB5.068e-2842.17Proteasome subunit beta type-2 OS=Trypanosoma bruc... [more]
PSB2_CAEEL5.257e-1732.35Proteasome subunit beta type-2 OS=Caenorhabditis e... [more]
PSB2_ENCCU1.295e-1526.38Probable proteasome subunit beta type-2 OS=Encepha... [more]
PSMB_PYRFU1.026e-1226.74Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001O08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185804 ID=CN185804; Name=CN185804; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTACGTGAGGAACACAATCACCACACGAACCCCTT
TAATTGATTTCCAGATTCAAATGACAGATAAGGAGTTTAAAGTTCTTTTT
AACTAATGAACTAATCTGAAACATAAGAAAAATCAAACAAAACAGTTTTT
GAGCAGTCAAATATAACATTATACCAATAAGTCCGACTCAGATTCAGACC
ACCTCATGCTGAAGAAACAGGGGTGTCCTTGACAGATTCACGCCAAGCAT
ACTCCCGTGCTCCATCCTTATCGACAATCTTGATGACAAAGTTTGGTGGT
GCCACCACCAGCCTGGATCGAATCTCCAGTATGCACTTATCAACCAAGTC
TACAGCTTCTTCAACTGACATGCCACTGTGGAAATGTCGGTCCATCATGG
AGAGCGAAAAATAGGATCCATAACCAAAAGCTGCCTTATCAACTTTGTGA
AGGGTTGCAATGTAGTCAATGTAGTAGAGAGATGGTCCTGTCTCCTTGTC
ATACCCAGCTAGAAGGATGTTAACCATGTAAGGGCTCTTTCTCAGAGCAG
TAGCAAGCTCTCCTCGGGTAAAGTTCGCCGCCGCAGCAGTAGTCAATGGA
ATTCCGTTACGAAATTGATACAACGACACATTCTTCTGAATGAACTCCGT
AAATTGAACACGGTCACCGGGTTCGCCACTGGCGGCGATGAGTTTGTGAG
AGTCGAGGACCATGATCTTGTCCTCGTTCGATTTATGAACCAAGATACTG
TGGACTG
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