CN185790
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.383e-22 Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = -1
Query: 382 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH-XXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFP 684
++ A A+ LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+ C+ L D+NRRLH P P TLTMC SC+R+ + FP
Sbjct: 120 QKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRVANAGVPSPAAAIFP 221 HSP 2 Score: 25.0238 bits (53), Expect = 4.383e-22 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = -3
Query: 662 KQHSTLNPKQKASLGKA 712
K H TL PKQK +L K+
Sbjct: 111 KTHHTLTPKQKVALAKS 127
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 4.383e-22 Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = -1
Query: 382 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH-XXXXXXXXXXXXQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFP 684
++ A A+ LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+ C+ L D+NRRLH P P TLTMC SC+R+ + FP
Sbjct: 120 QKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRVANAGVPSPAAAIFP 221 HSP 2 Score: 25.0238 bits (53), Expect = 4.383e-22 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = -3
Query: 662 KQHSTLNPKQKASLGKA 712
K H TL PKQK +L K+
Sbjct: 111 KTHHTLTPKQKVALAKS 127
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22 Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = -1
Query: 385 SKRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH------XXXXXXXXXXXXQPLYMHMP----AATLTMCPSCERI----GGGIADGNSKGPF 687
+++ ARQL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE+LT+EN++L LY+ P AA + +CPSCE++ GGG G S +
Sbjct: 140 AQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSSY 254
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22 Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = -1
Query: 385 SKRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH------XXXXXXXXXXXXQPLYMHMP----AATLTMCPSCERI----GGGIADGNSKGPF 687
+++ ARQL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE+LT+EN++L LY+ P AA + +CPSCE++ GGG G S +
Sbjct: 140 AQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSSY 254
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 9.581e-22 Identity = 55/90 (61.11%), Postives = 59/90 (65.56%), Query Frame = -1
Query: 430 ARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL-----HXXXXXXXXXXXXQPLY--MHMPAATLT---MCPSCE 669
A +LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCE LT ENRRL PLY H+PAA T +CPSCE
Sbjct: 184 ANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273 HSP 2 Score: 25.7942 bits (55), Expect = 9.581e-22 Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = -3
Query: 671 KQHSTLNPKQKASL 712
K+HSTL PKQK+ L
Sbjct: 170 KEHSTLTPKQKSDL 183
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 9.581e-22 Identity = 55/90 (61.11%), Postives = 59/90 (65.56%), Query Frame = -1
Query: 430 ARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL-----HXXXXXXXXXXXXQPLY--MHMPAATLT---MCPSCE 669
A +LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCE LT ENRRL PLY H+PAA T +CPSCE
Sbjct: 184 ANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273 HSP 2 Score: 25.7942 bits (55), Expect = 9.581e-22 Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = -3
Query: 671 KQHSTLNPKQKASL 712
K+HSTL PKQK+ L
Sbjct: 170 KEHSTLTPKQKSDL 183
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21 Identity = 59/126 (46.83%), Postives = 73/126 (57.94%), Query Frame = -1
Query: 331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMH------MPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPF--TNPSAA 684
+++A A +L LRPRQVEVWFQNRRARTKLKQTE++CE+LK+C +LT+ENRRL P + +PA+ LTMCP CERI + P P SPF PSAA
Sbjct: 104 QKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAATGPPAVRPP-PSSAAAAAPSPFHPRRPSAA 228
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21 Identity = 59/126 (46.83%), Postives = 73/126 (57.94%), Query Frame = -1
Query: 331 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYMH------MPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPF--TNPSAA 684
+++A A +L LRPRQVEVWFQNRRARTKLKQTE++CE+LK+C +LT+ENRRL P + +PA+ LTMCP CERI + P P SPF PSAA
Sbjct: 104 QKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAATGPPAVRPP-PSSAAAAAPSPFHPRRPSAA 228
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.580e-21 Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = -1
Query: 424 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYM-------HMPAATLTMCPSCERI 684
++ A A +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DEN+RL AATLTMCPSC R+
Sbjct: 141 QKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRV 234 HSP 2 Score: 26.9498 bits (58), Expect = 3.580e-21 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = -3
Query: 671 KQHSTLNPKQKASL 712
K HSTLNPKQK +L
Sbjct: 132 KTHSTLNPKQKVAL 145
BLAST of CN185790 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.580e-21 Identity = 51/94 (54.26%), Postives = 58/94 (61.70%), Query Frame = -1
Query: 424 KRQAWARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXQPLYM-------HMPAATLTMCPSCERI 684
++ A A +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DEN+RL AATLTMCPSC R+
Sbjct: 141 QKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRV 234 HSP 2 Score: 26.9498 bits (58), Expect = 3.580e-21 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = -3
Query: 671 KQHSTLNPKQKASL 712
K HSTLNPKQK +L
Sbjct: 132 KTHSTLNPKQKVAL 145 The following BLAST results are available for this feature:
BLAST of CN185790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185790 ID=CN185790; Name=CN185790; organism=Citrus sinensis; type=EST; length=714bpback to top |