CN185789

Overview
NameCN185789
Unique NameCN185789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.046e-41
Identity = 77/135 (57.04%), Postives = 102/135 (75.56%), Query Frame = 1
Query:  319 ISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 723
            +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G     VGWYHSHPGYGCWLSGID  TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE
Sbjct:   75 LSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPE 207          

HSP 2 Score: 21.9422 bits (45), Expect = 4.046e-41
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  255 AQTKFQQEKPWVNDPHYFKREDL 323
            +Q + QQE  W  DP YF++  L
Sbjct:   54 SQVRVQQEL-WKQDPTYFQKAAL 75          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.286e-39
Identity = 75/134 (55.97%), Postives = 98/134 (73.13%), Query Frame = 1
Query:  319 ISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYP 720
            IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + +  VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S   ++IGAFRT P
Sbjct:   68 ISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLP 199          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.331e-36
Identity = 73/143 (51.05%), Postives = 97/143 (67.83%), Query Frame = 1
Query:  310 SVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPE 723
            +V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N +GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ +  KV IG+FRTY +
Sbjct:   73 NVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD 215          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  313 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   71 VLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  313 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   71 VLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.181e-34
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 1
Query:  313 VKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT
Sbjct:   71 VLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            T  ++ IS+LALLKM+ HAR+G  +EVMGLM G+  D   I V+D FA+P  GT   V A    ++  M+D     KQ GR E  +GWYHSHPG+GCWLS +DV+TQ   +Q Q   +AVV+DP ++V  GKV I AFRT
Sbjct:   27 TAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDML---KQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSV-RGKVVIDAFRT 162          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.645e-28
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTY-PEGYKPPDEP 747
            T+ +V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFRT  P+      EP
Sbjct:   29 TSETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK-GKVVIDAFRTINPQSMALNQEP 176          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            T+ +V IS+LALLKM+ HARSG  +EVMGLM G   D   I V D FA+P  GT   V +    Y+    +    K  GR EN VGWYHSHPG+GCWLS +DV+TQ   +      +AVV+DP ++V  GKV + AFR+
Sbjct:   25 TSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK-GKVMLDAFRS 160          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            T   V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   27 TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
The following BLAST results are available for this feature:
BLAST of CN185789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_ASHGO4.046e-4157.04COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA1.286e-3955.97COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA1.331e-3651.05COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAST6.181e-3450.00COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS76.181e-3450.00COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS16.181e-3450.00COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
PSDE_DICDI3.881e-2850.7126S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_CAEEL8.645e-2847.3726S proteasome non-ATPase regulatory subunit 14 OS... [more]
YPT5_CAEEL1.475e-2748.92Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
PSDE_MOUSE3.285e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185789 ID=CN185789; Name=CN185789; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTAGAATATATATATATATATATAGAAATTAGAATTGTTGTTGGTG
TTGTTGGTGTTCGTCTTGTTTGTTGTTCCAGACAGTGTAGGGTGTAGGCA
GAGAGGGAGAGAAAACAACATAGTATCGATGGACTCGTCAATAGCGCAAA
AGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACACCGCCGACA
AACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTCTACGACGA
AGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGACCCTC
ACTACTTCAAGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGATGGTCGT
CCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTTATGCAAGGCA
AAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGCTTTGCCCGTT
GAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTTATGAATATAT
GGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTGGAGAATGCTG
TTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCTTTCGGGTATT
GATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGCCATTTTTGGC
TGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAAGTTGAGATTG
GAGCTTTCAGGACGTATCCTGAAGGATACAAGCCTCCGGATGAACCCATC
TCT
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