CN185789

Overview
NameCN185789
Unique NameCN185789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            T   V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   27 TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRT 714
            T+  V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V+ +A  + +  +     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR+
Sbjct:   26 TSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRS 161          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            T   V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   E  +AVV+DP ++V  GKV I AFR
Sbjct:   25 TAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 159          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG 726
            T  +V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G
Sbjct:   23 TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFRLIDTG 162          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 69/144 (47.92%), Postives = 91/144 (63.19%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG 726
            T  +V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+TQ   +Q     +AVV+DP ++V  GKV I AFR    G
Sbjct:   23 TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVK-GKVVIDAFRLIDTG 162          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 69/139 (49.64%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  301 TTSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            T  +V IS+LALLKM+ H+R+G  +EVMGLM G   D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV TQ   +Q     +AVV+DP ++V  GKV I AFR
Sbjct:   28 TKETVYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFR 162          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 67/135 (49.63%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  313 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            V IS+LALLKM+ H R G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLS +D++TQ   +Q     +AVV+DP ++V  GKV I AFR
Sbjct:   30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDML---KQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVK-GKVVIDAFR 160          
BLAST of CN185789 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 63/137 (45.99%), Postives = 89/137 (64.96%), Query Frame = 1
Query:  304 TSSVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 711
            + +V+IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V +    ++  ++     K  GR E  VGWYHSHPG+GCWLS +D+STQ   ++  +  +AVV+DP ++V  GKV I AFR
Sbjct:   18 SETVQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQ--MEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVK-GKVVIDAFR 151          
The following BLAST results are available for this feature:
BLAST of CN185789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_HUMAN3.285e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_ARATH3.285e-2747.4826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME4.290e-2749.6426S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_YEAST5.604e-2747.9226S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA7.318e-2747.9226S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_ASHGO1.248e-2649.6426S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_SCHPO1.380e-2549.6326S proteasome regulatory subunit rpn11 OS=Schizos... [more]
RPN11_ENCCU1.380e-2545.9926S proteasome regulatory subunit RPN11 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185789 ID=CN185789; Name=CN185789; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTAGAATATATATATATATATATAGAAATTAGAATTGTTGTTGGTG
TTGTTGGTGTTCGTCTTGTTTGTTGTTCCAGACAGTGTAGGGTGTAGGCA
GAGAGGGAGAGAAAACAACATAGTATCGATGGACTCGTCAATAGCGCAAA
AGACATGGGAACTGGAAAACAACATAGTATCGATGGAGACACCGCCGACA
AACTCAACAGCCGACACGTCAGCATCGGACGCGATTTTCTTCTACGACGA
AGGGGCGCAGACCAAGTTCCAGCAAGAGAAGCCCTGGGTCAATGACCCTC
ACTACTTCAAGCGTGAAGATCTCCGCACTCGCCCTCCTCAAGATGGTCGT
CCATGCGCGATCCGGTGGGACCATCGAGGTCATGGGCCTTATGCAAGGCA
AAACCGACGGCGACGCCATCATTGTCATGGACGCCTTTGCTTTGCCCGTT
GAAGGTACCGAAACCAGGGTTAATGCTCAGGCCGATGCTTATGAATATAT
GGTCGATTATTCCCAAACCAACAAACAGGCCGGACGTCTGGAGAATGCTG
TTGGGTGGTACCATTCACATCCTGGCTATGGATGCTGGCTTTCGGGTATT
GATGTTTCAACTCAAATGCTTAATCAGCAGTTTCAGGAGCCATTTTTGGC
TGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAAGTTGAGATTG
GAGCTTTCAGGACGTATCCTGAAGGATACAAGCCTCCGGATGAACCCATC
TCT
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