CN185769

Overview
NameCN185769
Unique NameCN185769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURCJ (L-threonine 3-dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+++GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGIMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURCH (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+++GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGIMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURCC (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+++GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGIMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURCA (L-threonine 3-dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+++GA   V V+  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGIMAVAIAKHVGARNVVITDINDYRLELARKMGATRAVNVARESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEQGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURA4 (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=tdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 58/178 (32.58%), Postives = 94/178 (52.81%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++    A+  GA  +VI D++DYRL +A+++GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L A   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGVMAAAIAKHVGARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURTA (L-threonine 3-dehydrogenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++ +  A+  GA  +VI D++DYRL +A+ +GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L +   GGKV L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGVMAVAIAKHVGARNVVITDINDYRLDLARRMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSLLESMNHGGKVALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAVDDYEKGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_BURCM (L-threonine 3-dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = -3
Query:  155 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAI 679
            +VLI GAGPIG++    A+  GA  +VI D++DYRL +A+++GA   V VS  +L+D+  ++      M  G DV  + +G     ++ L A   GGK+ L+G+   +  +       + +++ G++  +   TW   +  L+SG +D+ P+ITHRF     E   A   S   G  I
Sbjct:  166 DVLITGAGPIGVMAAAIAKHVGARNVVITDINDYRLELARKMGATRAVNVSRESLRDVMADLH-----MTEGFDVGLEMSGVPSAFTSMLEAMNHGGKIALLGIPPAQTAIDWNQVIFKGLEIKGIYGREMFETWYKMVAMLQSG-LDLSPIITHRFAADDYEKGFAAMLSGESGKVI 337          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = -3
Query:  167 LHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVA-KELGADNI----VKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKN-TWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARG 718
            +HA  R N+   + VL+MG G +GL+ M  A+A+GA  IV VD    R+  A K +GA        K + +L D A+  ++         D + D  G    + TA+ A + GG     G G   +  P+      E++V+G FRY +  +   L  + +G +DVKPLITHRF F  K+  +A+ET A G
Sbjct:  159 VHAMTRGNLKCGSRVLVMGCGTVGLLMMAVAKAYGAIDIVAVDASPSRVEFAQKYVGAKPFTPIAAKENESLPDYAQRYKQAIIEKYGEFDFAVDATGVGICIHTAVLALKRGGTFVQAGNGKPVIDFPINHIINYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLITHRFAF--KDALKAYETVASG 346          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 57/183 (31.15%), Postives = 100/183 (54.64%), Query Frame = -3
Query:  140 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 679
            +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+  NL+D+ +E+      M  G DV  + +G      + L     GGK+ ++G+   +M +  +    + + + G++  +   TW      ++SG +D+ P+ITH   +S  E ++ F+ + R G + KV+ N
Sbjct:  166 DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAEKMGATRAVNVAKENLEDVMQEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGDMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--YSIDEFQQGFD-AMRSGQSGKVILN 339          
BLAST of CN185769 vs. ExPASy Swiss-Prot
Match: TDH_SHEHH (L-threonine 3-dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 58/183 (31.69%), Postives = 99/183 (54.10%), Query Frame = -3
Query:  140 NVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGTAIKVMFN 679
            +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+   L+D+ +E+      M  G DV  + +G      + L     GGK+ ++G+   EM +  +    + + + G++  +   TW      ++SG +D+ P+ITH   FS  E ++ F+ + R G + KV+ N
Sbjct:  166 DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAQKMGATRAVNVAKEKLEDVMQEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSG-LDISPIITHH--FSIDEFQQGFD-AMRSGQSGKVILN 339          
The following BLAST results are available for this feature:
BLAST of CN185769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
TDH_BURCJ1.539e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia cepaci... [more]
TDH_BURCH1.539e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCC1.539e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURCA1.539e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia cenoce... [more]
TDH_BURA41.539e-1832.58L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
TDH_BURTA2.010e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia thaila... [more]
TDH_BURCM2.010e-1832.02L-threonine 3-dehydrogenase OS=Burkholderia ambifa... [more]
DHSO_SCHPO2.010e-1834.21Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]
TDH_SHEPA2.625e-1831.15L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_SHEHH2.625e-1831.69L-threonine 3-dehydrogenase OS=Shewanella halifaxe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185769 ID=CN185769; Name=CN185769; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTGAGAATCTGAATTTTATTTTGTAATAGATAGAAATAAAGTAA
TATGCTACACTTTGATTCATATTACTCGGCGACAATTCCATTTTATTTCA
TCTTTTGCCCAAACGTTTACTTTACGTTGTATTTTACAGATTAAACATGA
CCTTGATTGCAGTACCACCACGAGCACTTGTTTCAAAGGCCTCTTCCACT
TCTTTCTGGGAGAAACCAAACCTATGCGTGATAAGGGGCTTTACATCAAT
CTTTCCGCTTCTAAGGAACTCCAGACACAGTGGCCAGGTGTTCTTGTAGC
GAAACACCCCCACCACATCCACCTCCCTTGCAGCAGCCGGAGTGAGTGGG
ACAGTCATTTCATGATGACCCATCCCCACGAGGCAAACTTTACCACCTGC
ACGAGTAGCACTCAGTGCTGTTGACATGGTTTTGTTAAAGCCTGCACAAT
CAAAGCTCACATCTATTCCTGTCCCCATGGCTTTCTGTATCTTTTCCACT
TCTTCAGCTATGTCCTGCAAATTTGTTGAAACTTTAACAATATTATCTGC
ACCAAGTTCCTTTGCAACAGATAAACGATAGTCATCCACATCCACAATGA
CAATTCTAGGAGCTCCAAAAGCACGAGCTCCTAGCATTGTGACAAGTCCT
ATGGGCCCTGCTCCCATGATAAGCACATTTGTCTCAGGACCGATATTGGC
ACGGCGGCAGGCATGAAGACCAAACCTCAAGG
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