DC900011

Overview
NameDC900011
Unique NameDC900011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 51/175 (29.14%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARL--MSAMDTHLSVSTLA-GTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSA-DFGDNNLVGW--VKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQSTIA 628
            P I H D+K++N+LLDE    R++D G+A L  +++    L  S +A    GY+ PE+ Q     TK D Y+ GV+LLELLTG++  DS+   G+  LV W   + H +  +  + D  +     +      Q+  + S C       RP + +++     +      ++ S++A
Sbjct:  535 PPIAHSDLKATNILLDEELTPRIADCGLASLRPLTSNSVKLRASEIAIQNTGYIAPEHGQPGSSGTKSDTYALGVLLLELLTGRKAFDSSRPRGEQLLVKWASTRLHDRRSLEQMIDGGIAGTFSSRVAS--QYADIISLCTQAEKEFRPPVSEIVEALTALIQKQNKEASSSVA 707          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PKNX_STRCO (Probable serine/threonine-protein kinase SCO3848 OS=Streptomyces coelicolor GN=SCO3848 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 62/198 (31.31%), Postives = 91/198 (45.96%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLM--SAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAK--LKISDVFDPELMKE-----------DPNIEIELLQHLHV-ASACLDDRPWRRPTMIQVMAMFKEIQAGSGL---DSQSTIATDEGGFGTVEMV 664
            I+HRD+K +NV+L  N + +V DFG+AR M  S M T    + + GT  Y+ PE  +  +   + D+YS G +L ELLT + P     F  ++ V    QH +   +   VFDPE+  E           DP+   +    + V   ACLD +P      +  MA       G G    D  +T    +GG G   M+
Sbjct:  134 IVHRDIKPANVMLTRNGQVKVMDFGIARAMGDSGM-TMTQTAAVIGTAQYLSPEQAKGEQVDARSDLYSTGCLLYELLTVRPP-----FVGDSPVAVAYQHVREEPQAPSVFDPEITPEMDAIVLKALVKDPDYRYQSADEMRVDIEACLDGQPVGATAAMGAMA-----AGGYGAYPDDQPTTALRSDGGGGATTML 320          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y5393_ARATH (Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 50/160 (31.25%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSF--RCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN-----NLVGWV-KQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFK 583
            I+H D+K  N+LLD N   +VSDFG+A+L    ++ LS+    GT GY+ PE +     R S K DVYS+G+++++++ G R  +  +  D+         W+ K     + + +F  E+ KE+  I  +++    V   C+   P  RP+M +V+ M +
Sbjct:  617 IVHFDIKPQNILLDGNLCPKVSDFGLAKLCEKRESVLSLMDTRGTIGYIAPEVFSRMYGRVSHKSDVYSFGMLVIDMI-GARSKEIVETVDSAASSTYFPDWIYKDLEDGEQTWIFGDEITKEEKEIAKKMIV---VGLWCIQPCPSDRPSMNRVVEMME 772          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: IRAK1_MOUSE (Interleukin-1 receptor-associated kinase 1 OS=Mus musculus GN=Irak1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 61/194 (31.44%), Postives = 83/194 (42.78%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLM-------SAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPT---------------DSADFGDNNL--------VG-----WVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAG 598
            P +IH D+KSSNVLLDE    ++ DFG+AR         S   T    ST+ GT  Y+P EY ++ R +   D +S+GVV+LE L G+R                 D A+     L        VG     W    A        D       P + + L Q   +A  C+  R  +RP M QV    + +QAG
Sbjct:  334 PSLIHGDIKSSNVLLDERLMPKLGDFGLARFSRFAGAKASQSSTVARTSTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVILETLAGQRAVRTQGAKTKYLKDLIEDEAEEAGVTLKSTQPTLWVGVATDAWAAPIAAQIYKKHLDSRPGPCPPQLGLALAQ---LACCCMHRRAKKRPPMTQVYKRLEGLQAG 524          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: YR818_MIMIV (Putative serine/threonine-protein kinase/receptor R818 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R818 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 45/150 (30.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            P IIHRD+K SN+L+D++   +++DFG AR+        SV T  GTP +  PE  +  + + K DV+S+G+V+ E+LT K P    +F              + I +   P++  + P      +    +   C   +P +RP+M  V+
Sbjct: 1509 PIIIHRDIKPSNILVDDSMNVKIADFGFARIKE----ENSVMTRCGTPCWTAPEIIRGEKYTEKVDVFSFGIVMWEVLTCKEPFSGCNF----------MKVSMDILEGARPQIPSDCP------IDFTKLMKQCWHAKPDKRPSMEDVI 1638          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: ANKK1_MOUSE (Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 44/153 (28.76%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLM--SAMDTHLSVSTLAGTPGYVPPEYY--QSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQV 568
            P ++H D+K  N+LLD N   ++SDFG+++ M  S    ++  S L GT  Y+PPE +   +     + DVYS+ +V+ E+LT K+P     +   N++  +     ++++    P L         E+ Q +++   C D  P +RP  + V
Sbjct:  151 PPLLHLDLKPGNILLDNNMHVKISDFGLSKWMEQSTQKQYIERSALRGTLSYIPPEMFLENNKAPGPEYDVYSFAIVIWEILTQKKP-----YAGLNMMTII-----IRVAAGMRPSLQDVSDEWPEEVHQMVNLMKRCWDQDPKKRPCFLNV 293          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD------THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKR 367
            IIHRD+K +N+LL+ NF ++V D G++ ++ A D      T    ++  GT  Y+ PEY ++ R S K DVY++G+++L+LLTG++
Sbjct:  578 IIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQ 663          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARL-----MSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGK 364
            IIHRD+K +N+LLD NF ++V D G++ +     +S   T    ++  GT  Y+ PEY ++ R S+K D+YS+G++LL+LLT K
Sbjct:  598 IIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAK 681          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTM-IQVMAMFKEIQAGSGLDSQSTIATDE 637
            ++H D+K +N+LLD N  +++SDFG   L+    +    + + GT  Y+ PE   S   + K DVYS+G++LL LLTG RP        +N V +   +  L  +D+ DP L  + P ++ E L  L  A  C +     RP +  +V  + + ++A SG  S   +  +E
Sbjct:  599 LVHGDLKPANILLDSNLVSKLSDFGTCSLLHPNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTG-RPA----LRISNEVKYALDNGTL--NDLLDP-LAGDWPFVQAEQLARL--ALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNE 759          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.115e-12
Identity = 32/86 (37.21%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD----THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPT 373
            I+HRD+K  N+LL+ N+ ++++D G+A+L++ +     T    S LAGT  Y+ PEY+++     K D+Y++G+++L+LLT + P+
Sbjct:  560 IVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPS 645          
The following BLAST results are available for this feature:
BLAST of DC900011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
SRF2_ARATH7.270e-1329.14Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
PKNX_STRCO7.270e-1331.31Probable serine/threonine-protein kinase SCO3848 O... [more]
Y5393_ARATH9.495e-1331.25Probable receptor-like protein kinase At5g39030 OS... [more]
IRAK1_MOUSE9.495e-1331.44Interleukin-1 receptor-associated kinase 1 OS=Mus ... [more]
YR818_MIMIV1.240e-1230.00Putative serine/threonine-protein kinase/receptor ... [more]
ANKK1_MOUSE1.240e-1228.76Ankyrin repeat and protein kinase domain-containin... [more]
PUB53_ARATH1.620e-1240.70Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB35_ARATH1.620e-1242.86U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB33_ARATH1.620e-1231.58U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB34_ARATH2.115e-1237.21U-box domain-containing protein 34 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC900011 VSS Citrus sinensis cDNA clone VS27Q22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900011 ID=DC900011; Name=DC900011; organism=Citrus sinensis; type=EST; length=850bp
GTTTTTTTTTTTTTTTTTTTAGAGAAAATAGAAATTTTTATATATTAAAA
GGGAAAGGAAGAAACAGACTAGAAAAAAAAAAACTCGAGACTAGCTCGTG
CCGAATTCGGCACGAGGCATCCCACACATTATCCACCGGGATATGAAATC
GAGCAATGTTCTGCTAGACGAAAACTTTGAGGCCAGAGTCTCAGATTTTG
GAATGGCAAGACTAATGAGTGCGATGGATACACATTTGAGTGTCAGTACG
CTAGCAGGCACACCCGGCTATGTCCCTCCCGAATACTATCAAAGCTTTAG
ATGTTCGACGAAAGGCGATGTTTACAGTTATGGTGTAGTTTTGCTCGAGT
TGCTAACGGGAAAAAGGCCAACAGATTCAGCAGATTTCGGTGACAATAAC
CTAGTTGGGTGGGTAAAGCAGCATGCGAAGCTGAAAATAAGCGATGTCTT
TGATCCAGAACTCATGAAAGAGGATCCAAACATCGAGATTGAGCTTCTTC
AACACTTGCATGTAGCGAGTGCTTGCCTGGATGATCGACCATGGAGGAGA
CCGACAATGATTCAGGTTATGGCAATGTTTAAAGAAATCCAAGCCGGTTC
AGGACTTGACTCGCAATCTACTATTGCCACTGATGAAGGAGGTTTCGGTA
CAGTCGAAATGGTAGAGATGAGCATCCAAGAAGCTCCAGAACTAAGCACC
AAGCCTTAGNCCATTCAATTTTCAGGACAAGCATTCTTTCAGTGCCCCAA
AATTTTCCCACTTGAAAACCAAAAAAGTTGCCTTTGGTATCTCTACCATT
TAGTGTATGTAATCTTTGTATCCCTTTTGAAAATTCTTGTTATTTATACA
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