CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMS (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain AS9601) GN=rplQ PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 65/114 (57.02%), Postives = 90/114 (78.95%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  R+P LS+P DQR+ L  GLTTQL++ GR+ T +ARA A+R   ++MI+LAK+GSL  RR+A+G+IY+K++VH+LF + +ERYG+R GGYTRI+RT+ R GDN  +A IE
Sbjct:    1 MRHQLRIPLLSKPADQRKALLRGLTTQLIREGRVTTTKARAKALRNEAERMISLAKEGSLASRRRAIGYIYDKKLVHSLFEKAKERYGDREGGYTRIVRTVSRKGDNAQMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_NOSP7 (50S ribosomal protein L17 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplQ PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RV KLS+P DQRR L   LTT+L++HG+I T   RA  +R  V+KMITLAK+GSL  RR+ALG+I++KQ+VHALF +V  RYG+R GGYTRI+ T+PR GDN  +A IE
Sbjct:    1 MRHRCRVKKLSKPADQRRALLRSLTTELIRHGKITTTLIRAKVLRSEVEKMITLAKNGSLAARREALGYIFDKQLVHALFEQVPTRYGDRQGGYTRILHTVPRRGDNAKMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNSC (50S ribosomal protein L17 OS=Synechococcus sp. (strain CC9605) GN=rplQ PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L RP DQR+ +   LTTQL++ GR+ T +ARA A+R   ++MITLAKDGSL  RR+A+G+IY+KQ+VHALF +   RY +R GGYTRI RT+PR GDN  +A IE
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRALTTQLIREGRVTTTKARAKALRDEAERMITLAKDGSLASRRRAMGYIYDKQLVHALFDKAPNRYSDRKGGYTRITRTVPRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNP6 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH   VP+L RP DQR+ L   LTT+++++G + T +ARA AVR  V++M+TLAKDGSL  RRQALG+IY+KQ+VH LF +  ERY +R GGYTRI+RT+ R GDN  +A IE
Sbjct:    1 MRHRCNVPQLGRPADQRKALLRSLTTEIIRNGTVTTTKARAKAVRSEVERMVTLAKDGSLAARRQALGYIYDKQLVHLLFEQAPERYAKRQGGYTRILRTVRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNE7 (50S ribosomal protein L17 OS=Synechococcus elongatus (strain PCC 7942) GN=rplQ PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 66/114 (57.89%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH   VP+L RP DQR+ L   LTT+++++G + T +ARA AVR  V++M+TLAKDGSL  RRQALG+IY+KQ+VH LF +  ERY +R GGYTRI+RT+ R GDN  +A IE
Sbjct:    1 MRHRCNVPQLGRPADQRKALLRSLTTEIIRNGTVTTTKARAKAVRSEVERMVTLAKDGSLAARRQALGYIYDKQLVHLLFEQAPERYAKRQGGYTRILRTVRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNPW (50S ribosomal protein L17 OS=Synechococcus sp. (strain WH7803) GN=rplQ PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L RP DQR+ +  GLTTQL++ GR+ T +ARA A+R   ++MITLAK+GSL  RR+ LG++Y+KQ+VHALF +  +RY +R GGYTRI RT+ R GDN  +A IE
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKEGSLASRRRVLGYVYDKQLVHALFEKAPDRYSDRKGGYTRITRTVRRRGDNAEMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNJA (50S ribosomal protein L17 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplQ PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.955e-31
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH RR P L++P DQR+ L   LTT LL+ GRI T +ARA A+R   +KMITLAKDGSL  RRQAL +IY+K++V +LF +  ERY +R GGYTRI+RT+ R GD   +A IE
Sbjct:    1 MRHRRRTPHLNKPADQRKALMRALTTALLREGRITTTKARAKAIRATTEKMITLAKDGSLAARRQALAYIYDKELVRSLFEQAPERYRDRPGGYTRILRTVRRRGDGAEMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNJB (50S ribosomal protein L17 OS=Synechococcus sp. GN=rplQ PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH RR P L++P DQR+ L   LTT LL+ GRI T +ARA A+R   +KMITLAK+GSL  RRQAL +IY+K++V +LF +  ERY +R GGYTRI+RT+ R GD   +A IE
Sbjct:    1 MRHRRRTPHLNKPADQRKALMRALTTALLREGRITTTKARAKAIRATTEKMITLAKEGSLAARRQALAYIYDKELVRSLFEQAPERYRDRPGGYTRILRTVHRRGDGAEMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THETN (50S ribosomal protein L17 OS=Thermoanaerobacter tengcongensis GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQRR +   L T  L++ RI T  ARA  VRK  +KMITL K G LH RRQAL +I ++ +V  LF ++  RY ERNGGYTRI +  PR GD  PLA IE
Sbjct:    5 KLGRPSDQRRAMLRNLVTDFLRYERITTTEARAKEVRKIAEKMITLGKRGDLHARRQALAYILDESVVKKLFDDIAPRYKERNGGYTRIFKLGPRRGDGAPLAVIE 110          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THEPX (50S ribosomal protein L17 OS=Thermoanaerobacter sp. (strain X514) GN=rplQ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 56/106 (52.83%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQRR +   L T  LK+GRI T  ARA  VR   +KMITL K G LH RRQAL +I ++ +V  LF E+  +Y +R GGYTRI++  PR GD  PL  IE
Sbjct:    5 KLGRPSDQRRAMLRNLVTDFLKYGRITTTEARAKEVRSISEKMITLGKRGDLHARRQALAYILDESVVKKLFDEIAPKYKDRQGGYTRILKLGPRRGDGAPLVIIE 110          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_PROMS2.799e-3357.0250S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_NOSP72.799e-3360.5350S ribosomal protein L17 OS=Nostoc punctiforme (s... [more]
RL17_SYNSC4.774e-3358.7750S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_SYNP62.369e-3257.8950S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_SYNE72.369e-3257.8950S ribosomal protein L17 OS=Synechococcus elongat... [more]
RL17_SYNPW3.095e-3257.0250S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_SYNJA9.955e-3157.8950S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_SYNJB2.896e-3057.0250S ribosomal protein L17 OS=Synechococcus sp. GN=... [more]
RL17_THETN4.785e-2554.7250S ribosomal protein L17 OS=Thermoanaerobacter te... [more]
RL17_THEPX3.102e-2452.8350S ribosomal protein L17 OS=Thermoanaerobacter sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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