CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MOOTA (50S ribosomal protein L17 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL R    R+ +   + T LLKHG+I+T   RA  ++   +KMITL K G LH RRQAL ++ ++ +V  LF E+  RY ++NGGYTRI++T  R GD  P+  IE
Sbjct:    5 KLGRLAGHRKMMLRNIVTSLLKHGKIETTELRAKELKSLAEKMITLGKRGDLHSRRQALAYLLDEDVVTKLFKEIGPRYADKNGGYTRIVKTGFRQGDGAPMVLIE 110          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOTE (50S ribosomal protein L17 OS=Clostridium tetani GN=rplQ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR  +     T LLK G+I+T   RA   R   +KMITL K G L  RRQAL F+ E+++V  LF ++  +Y ERNGGYTR+ +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRMAMLRNQVTSLLKSGKIETTVTRAKETRSLAEKMITLGKRGDLQARRQALSFVTEEEVVKRLFDDIAPKYAERNGGYTRMYKVGPRRGDGAEIVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CAUSK (50S ribosomal protein L17 OS=Caulobacter sp. (strain K31) GN=rplQ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRHG+   KL R    R  +F  ++  L+KH +I T   +A  +R +V+K++TLAK G LH RRQA+  + + + V  LFA +  RY ER GGY R+++   R GDN PLA IE
Sbjct:    1 MRHGKAHRKLGRTSAHRTAMFANMSASLIKHEQIVTTLPKAKELRPFVEKLVTLAKRGDLHARRQAISIVRDVEQVGKLFAAIGPRYKERQGGYIRVLKAGFRYGDNAPLAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CARHZ (50S ribosomal protein L17 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplQ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL R  D R  +   L T LLK G+I T  AR  + +   +K+ITLAK+ +LH RRQAL ++YE+ +V  LF E+  +Y +R GGYTRI++  PR GD   +  +E
Sbjct:    5 KLGRRKDHREAMLRNLVTSLLKEGKIITTEARGKSAKAVAEKLITLAKNDTLHNRRQALAYLYEENVVRKLFKEIGPKYADRPGGYTRIVKIGPRRGDGAMMVLVE 110          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_STRMU (50S ribosomal protein L17 OS=Streptococcus mutans GN=rplQ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 56/122 (45.90%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEK----------------QIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL R   QR+ +F  LTT LL +  I T  ARA  +RK V+KMITL K G+LH RRQA  F+  +                  +  LF+E+  RY ERNGGYTRI++T PR GD  P+A IE
Sbjct:    5 KLGRTSSQRKAMFRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGNLHARRQAAAFVRNEIASESYDEAKDEYTSTTALQKLFSEIAPRYAERNGGYTRILKTEPRRGDAAPMAIIE 126          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PHEZH (50S ribosomal protein L17 OS=Phenylobacterium zucineum (strain HLK1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRHG+   KL R    R  +F  ++  L+KH +I T   +A  +R +V+K++TLAK G LH RRQA+  + + + V  LFA +  RY +RNGGY R+++   R GDN P+A IE
Sbjct:    1 MRHGKAHRKLGRTSAHRTAMFANMSASLIKHEQIVTTLPKAKELRPFVEKLVTLAKRGDLHARRQAISHVRDVEQVGKLFAVLGPRYKDRNGGYIRVLKAGYRHGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SACEN (50S ribosomal protein L17 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -2
Query:  175 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYI 489
            +L   P   R +   L T L +HG+I T  A+A  +R   +++IT AK G LH RR+ +  I +K +VH LFAE+   + +RNGGYTRI++ +PR GDN  +A I
Sbjct:    9 RLGGSPSHERLMLANLATSLFEHGKITTTEAKAKRLRPLAERLITKAKKGDLHNRREVMKTIRDKDVVHKLFAEIGPHFADRNGGYTRIVKAMPRRGDNAKMAVI 113          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ALKOO (50S ribosomal protein L17 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL R    R  +   L T LLK+GRI+T   RA   R+  +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI++  PR GD   +  IE
Sbjct:    6 KLGRVSAHRNLMLRNLVTSLLKNGRIETTDTRAKETRRLAEKMITLAKRGDLHARRQVLSFVTEETVVKNLFDEIAPKYQERNGGYTRIMKLGPRRGDAAEMVIIE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNAS (50S ribosomal protein L17 OS=Syntrophus aciditrophicus (strain SB) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRHG+   KL R    R  +   + T  L++  +KT   RA  +RK  +KMITL K G +H RRQAL  + ++ +V  +F E+ ERY +R GGYTRII+   R GD+ P++ IE
Sbjct:    1 MRHGKTGRKLGRTSSHRTAMLRNMVTSFLRYESVKTTDTRAKELRKLAEKMITLGKRGDVHARRQALAVVRDRAVVTKIFNELAERYRDRPGGYTRIIKAGYREGDSAPISIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MAGSA (50S ribosomal protein L17 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplQ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRHG    KL+R    R+ LF  L   LLKH +IKT   +A   R  V+K+ITL K G LH RRQA  F+ + ++V  LFA +  RY ER GGY R+++   R GD  P+A IE
Sbjct:    1 MRHGMSGRKLNRDKSARKALFVSLANALLKHEQIKTTLPKAKDARPIVEKLITLGKRGDLHARRQAYAFLRDDKVVAKLFAVIGPRYKERQGGYCRVLKAGFRYGDCAPMAIIE 114          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_MOOTA9.339e-2145.2850S ribosomal protein L17 OS=Moorella thermoacetic... [more]
RL17_CLOTE1.593e-2046.2350S ribosomal protein L17 OS=Clostridium tetani GN... [more]
RL17_CAUSK1.593e-2043.8650S ribosomal protein L17 OS=Caulobacter sp. (stra... [more]
RL17_CARHZ1.593e-2044.3450S ribosomal protein L17 OS=Carboxydothermus hydr... [more]
RL17_STRMU2.081e-2045.9050S ribosomal protein L17 OS=Streptococcus mutans ... [more]
RL17_PHEZH2.081e-2042.9850S ribosomal protein L17 OS=Phenylobacterium zuci... [more]
RL17_SACEN2.717e-2042.8650S ribosomal protein L17 OS=Saccharopolyspora ery... [more]
RL17_ALKOO2.717e-2049.0650S ribosomal protein L17 OS=Alkaliphilus oremland... [more]
RL17_SYNAS3.549e-2042.9850S ribosomal protein L17 OS=Syntrophus aciditroph... [more]
RL17_MAGSA3.549e-2046.4950S ribosomal protein L17 OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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