CN185715

Overview
NameCN185715
Unique NameCN185715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.268e-24
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 358
            +YN+ +R+GRGF+L+E++AAG+  K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:   64 RYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 58/133 (43.61%), Postives = 81/133 (60.90%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 394
            +YN+ +RAGRGFTLEELKAAG+  + A TIGI+VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R
Sbjct:   63 RYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN  +RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   64 KYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.500e-18
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN  +RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   64 KYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITL---EKPTVDLVKVTQDMKSFKAYDKLRIERANER 379
            KYN  +RAGRGFTL ELKA GI  K A TIGISVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P     L   E P     +  +  ++ K Y  +R +RA E+
Sbjct:   64 KYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQPAPESGLRAVEVPEQTAYRTLRLARNEKKYKGIREKRAKEK 192          
BLAST of CN185715 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 2
Query:    2 KYNL*LRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 394
            KYN  +RAGRGFT  E+KAAG+    A TIGI+VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R
Sbjct:   64 KYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
The following BLAST results are available for this feature:
BLAST of CN185715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_SCHMA4.268e-2447.0660S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI1.518e-2143.6160S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13A_YEAST2.052e-1841.9860S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST3.500e-1841.9860S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_CANAL5.970e-1841.0960S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_SACEX2.268e-1740.4660S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185715 ID=CN185715; Name=CN185715; organism=Citrus sinensis; type=EST; length=637bp
GAAATATAACCTGTAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAAC
TCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAACAATTGGCATTTCA
GTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGT
TCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGTTTTCCCAAGACGTG
CTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGGAATTGGCAACAGCA
ACTCAAGTACAAGGACCTTACATGCCCATTACTCTTGAGAAGCCTACTGT
CGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCTTATGACA
AGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTGGTGCCAGGTTGAAG
AAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAAACAAACTTGTTTAA
GCAGCACATTGAGTGTGGCACTACATTTTACATTTCAATTTTGAATCTTT
TTGTTATAGTGATTTCAATCTCTTAGCTTTAGGTTTGAAGAAGTTATTTC
ATTTTGAATGTGGGAAGATTTCTTGGTTATATTATTTGCAATGGACCTAC
CCTATGGTTGTCCTGTTTTTTAAAAAAAAAAAAAAAA
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