CN185714

Overview
NameCN185714
Unique NameCN185714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.890e-33
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 73/131 (55.73%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 140.584 bits (353), Expect = 6.438e-33
Identity = 72/131 (54.96%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.873e-32
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.173e-32
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ KLRAGRGFTLEELK AGI    A TIGI+VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  V+  +VT+D K FKA+  LR  R + R  G R
Sbjct:   64 RYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.450e-32
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:   65 RYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28
Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +YNMK+RAGRGFTLEELKAAG+ +++A TIGI VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PIT ++   +   +T++ K+F A+  L  ERA  R+ GAR
Sbjct:   64 RYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPIT-QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 65/131 (49.62%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYN +LR GRGF+L+ELKAAGI KK A  IGISVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P T          +T + +  K +D+LR  RA++R  G R
Sbjct:   41 KYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKR 171          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 62/131 (47.33%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +Y+ K+RAGRGFTL E++AAG+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R+  +  G R
Sbjct:   64 RYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.956e-26
Identity = 64/135 (47.41%), Postives = 91/135 (67.41%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            +YN K R GRGF+L+ELKAAGI +  A TIGI+VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P    IT ++P     +VT   +  + +  LR ERA++++ G R
Sbjct:   65 RYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRLLRKERADKKYRGKR 195          
The following BLAST results are available for this feature:
BLAST of CN185714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK2.890e-3355.7360S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_MOUSE4.930e-3355.7360S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN6.438e-3354.9660S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN1.873e-3254.9660S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_DROME4.173e-3254.5560S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_CRIGR5.450e-3254.9660S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHPO1.257e-2851.9160S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_LUMRU4.775e-2849.6260S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_SPOFR2.620e-2647.3360S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CAEEL9.956e-2647.4160S ribosomal protein L13 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185714 ID=CN185714; Name=CN185714; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTAAAAACAAGACAACCATAGGGTAGGCCCCTTTTAAATA
CTATAACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAAC
CTAAAGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAA
TGTAAAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTAC
TTCTTCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAA
ATGGCGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGG
ACTTCATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGA
GTAATGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTC
AGGAGCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAA
CCAACTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCC
TCAAGAGAACGGTTCTTGCGTCGATGATCGACTGAAATGCCAATTGTTGG
AGCCAGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGC
CTCTGCCAGCCCTTAATTTCATGTTATATTT
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