CN185714

Overview
NameCN185714
Unique NameCN185714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  275 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 631
            +YNMK+R+GRGF+L+E++AAG+  K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:   64 RYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.040e-23
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 631
            +YNMK+RAGRGFTLEELKAAG+  + A TIGI+VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R
Sbjct:   63 RYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.392e-19
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   64 KYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.375e-19
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:   64 KYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  254 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITL---EKPTVDLVKVTQDMKSFKAYDKLRIERANER 631
            KYN K+RAGRGFTL ELKA GI  K A TIGISVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P     L   E P     +  +  ++ K Y  +R +RA E+
Sbjct:   64 KYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQPAPESGLRAVEVPEQTAYRTLRLARNEKKYKGIREKRAKEK 192          
BLAST of CN185714 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.540e-18
Identity = 54/131 (41.22%), Postives = 74/131 (56.49%), Query Frame = -1
Query:  239 KYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 631
            KYN K+RAGRGFT  E+KAAG+    A TIGI+VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R
Sbjct:   64 KYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
The following BLAST results are available for this feature:
BLAST of CN185714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_SCHMA1.698e-2548.7460S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI6.040e-2345.1160S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13A_YEAST1.392e-1942.7560S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST2.375e-1942.7560S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_CANAL4.051e-1941.8660S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_SACEX1.540e-1841.2260S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185714 ID=CN185714; Name=CN185714; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTAAAAACAAGACAACCATAGGGTAGGCCCCTTTTAAATA
CTATAACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTTCAAAC
CTAAAGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAATTGAAA
TGTAAAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTGTTTAC
TTCTTCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCACCAAA
ATGGCGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTTGAAGG
ACTTCATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCTCAAGA
GTAATGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAATTCCTC
AGGAGCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAAAACAA
CCAACTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAAGACCC
TCAAGAGAACGGTTCTTGCGTCGATGATCGACTGAAATGCCAATTGTTGG
AGCCAGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGTAAAGC
CTCTGCCAGCCCTTAATTTCATGTTATATTT
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