CN185707

Overview
NameCN185707
Unique NameCN185707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 2
Query:   92 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            D+KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   92 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 352
            D KP      + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    3 DDKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 94          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  110 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 352
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SMO3L_DANRE (Small ubiquitin-related modifier 3-like OS=Danio rerio GN=sumo3l PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  110 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGA 352
            ++ HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:   13 ENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGS 93          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   92 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   92 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            DKK  +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:   15 DKK--EGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  107 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:   10 DNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   92 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            D+KP      + + HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG
Sbjct:    3 DEKPKEGVKTENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   89 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CN185707 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   89 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 349
            ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:   11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of CN185707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO2_DANRE1.791e-1851.65Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SMO2B_XENLA1.791e-1851.09Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO3_DANRE2.339e-1854.32Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]
SMO3L_DANRE2.339e-1854.32Small ubiquitin-related modifier 3-like OS=Danio r... [more]
SUMO1_XENTR4.411e-1750.00Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA4.411e-1750.00Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL5.760e-1750.62Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG7.523e-1747.25Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO1_SPETR7.523e-1747.13Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT7.523e-1747.13Small ubiquitin-related modifier 1 OS=Rattus norve... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185707 ID=CN185707; Name=CN185707; organism=Citrus sinensis; type=EST; length=526bp
GAGGCAGAAACAAAGAGAGGGTAAAATTCAATTCTAAGAACCTGTAAGGA
TGTCAGCGACCGGTGGCGGCGGCGGCGGTGGTCAGGAGGAGGACAAGAAG
CCCGTCGATCAGTCGGCGCACATTAACCTCAAAGTCAAGGGCCAGGATGG
CAATGAGGTGTTTTTTAGAATTAAGCGAAGCACCCAGTTGAAAAAGCTCA
TGAATGCCTACTGTGATCGGCAGTCGGTGGAGTTAAACTCTATTGCTTTC
TTGTTTGATGGGCGGAGACTCCGAGGAGAGCAGACTCCAGATGAGCTTGA
GATGGAGGATGGAGATGAAATTGATGCAATGCTGCATCAGACTGGAGGTG
CGCTTGGAAGCGGTTAGCTGCAGTTTGAAATATTTTGAGCATCGCTGGCG
GACTTGATGTTTGAGTTTTTTAAATTAGCCTATATCTATGGAAATATTAC
TGTAAATGATGACTTGGATCTTATAATTAACTTGAATTTAAGTCATGGTT
TATTATCAATAAAAAAAAAAAAAAAA
back to top