CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  503 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-SPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 736
            D ID ALLRPGRLD+ IY+  PD  +RL+I K C +K +     VDL  LA  T+G+SGA++  +CQ A   AI E+++
Sbjct:  663 DEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTEGYSGAEVVLLCQEAGLAAIMEDLD 741          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  521 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 730
            +DPAL RPGR D+ I++PLPD   RL I     R  P+ KDVDL  +A+ T GF+GAD+  +  +A  YA
Sbjct:  419 LDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYA 488          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 40/92 (43.48%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  473 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIERERRRS 736
            D +DPALLRPGRLD+ I  PLPD   +  IF+    K  +S +VDL          SGA+I  ICQ A  +AIR+N    + KD E+  + S
Sbjct:  300 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKAS 391          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D +DPALLRPGRLD+ + IPLP+E  RL+IFK    K   + + D  A  K + GF+GADI      A  +AIR++
Sbjct:  331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = -2
Query:  485 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 736
            D +DPALLRPGRLD+ I IPLP+E  R++I K  L K     ++D  AL K T G +GAD+  +   A   AI+E+ +  I+ +
Sbjct:  282 DTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSD 365          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EESR  I K   RK  + + +DL+ +A+   G SGA++  +C  A  +A+RE
Sbjct:  312 DILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EESR  I K   RK  + + +DL+ +A+   G SGA++  +C  A  +A+RE
Sbjct:  312 DILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  533 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRA 736
            D+IDPALLRPGRLD+ +Y P PD+ SRL+I        P++ DVDL+ +A  T  F+GAD+  +   A
Sbjct:  987 DLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNA 1054          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR----KSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR--------ENIEKDIER 736
            DI+DPALLRPGR D+ I+I  PD + R  IFK  LR     S + KD   R LA  T GFSGAD+  +C  A   A R        ++ E+ IER
Sbjct:  456 DILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIER 550          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR----KSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR--------ENIEKDIER 736
            DI+DPALLRPGR D+ I+I  PD + R  IFK  LR     S + KD   R LA  T GFSGAD+  +C  A   A R        ++ E+ IER
Sbjct:  457 DILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIER 551          
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
AFG2_YEAST3.728e-1248.10ATPase family gene 2 protein OS=Saccharomyces cere... [more]
YME1_SCHPO4.869e-1248.57Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
PRS6B_DICDI4.869e-1243.4826S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS10_YEAST6.359e-1247.3726S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS10_SCHPO8.305e-1244.05Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS8B_ARATH1.085e-1145.3326S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH1.085e-1145.3326S protease regulatory subunit 8 homolog A OS=Ara... [more]
PEX1_HUMAN1.085e-1148.53Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
AFG32_MOUSE1.085e-1145.26AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN1.085e-1145.26AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
back to top