CN185660
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.603e-25 Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = -1 Query: 303 KEAAALREMQAKVEKEMGAAQDPANVAAN--------QASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 713 +EA L E+Q +E + + + N +EE DSRSV+VGNVDY T +++ +FQSCGTVNR+TIL+DK G PKG YVEF+ +++ A+ LN+S + RQLK+ PKRTN+P M+Q P + G RGR Sbjct: 56 EEAKKLTELQNNLESNI-TGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202 HSP 2 Score: 26.9498 bits (58), Expect = 5.603e-25 Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = -3 Query: 712 ELDEMKKRLKEMEE 753 EL+EMKKR +EMEE Sbjct: 43 ELEEMKKRFREMEE 56
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25 Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -1 Query: 282 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 617 K+E D RSV+VGNVDY T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V A+ ++E+ GR +KVLPKRTN+PG+ +R R R N RG+RP P+ Sbjct: 87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23 Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = -1 Query: 306 MQAKVEKEMGAAQ----DPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 689 +Q + E+E G A P V + K EAD RSV+VGNVDY + EE++ HF CG V+RVTIL DKF G PKG+AY+EF +VQ A++L++S GR +KVLPKRTN PG+ + G RG Sbjct: 109 VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.555e-22 Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = -1 Query: 354 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 611 EAD RSV+VGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +VQ A++L+ES GR +KVLPKRTN PG+ Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.129e-21 Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = -1 Query: 354 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 629 ++ SKE EAD RSVFVGNVDY + E++ +F CG ++RVTIL DKF G PKG+AY+EF +V+ A+ L+ES GR +KVLPKRTN PG+ Sbjct: 131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20 Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = -1 Query: 255 KEAAALREMQAKVEKEMGAAQDPANVAANQ--ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 713 K+ L E+ K+ E G Q ++ + A + EADSRS+FVGN+ TPE+++ HF+ CG + R+T+L D+ G PKG+ Y+EF ++ALQLN EL G+++ V KRTN+PG + ++ ++N P M Y PY PPY SP +GY K Sbjct: 25 KQELELDELVGKLSIE-GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = -1 Query: 354 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 710 E+A L ++Q K+ K + +A A V + ++ D++SVF+GNVD+ T EEV++HF+ CG + R TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM Sbjct: 27 ESAILEQIQNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18 Identity = 48/120 (40.00%), Postives = 77/120 (64.17%), Query Frame = -1 Query: 354 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 710 E+A L+++Q K+ K + +A A V + ++ D++SVF+GNVD+ T EE+++HF+ CG + + TI DKF + K FAY+EF + +++ AL +N S R + V KRTN+PGM Sbjct: 21 ESAILQQIQNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12 Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = -1 Query: 381 KEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 713 +E+AA + ++ + + ++A+ +S+ D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F D+V AL+LN SEL GR+L+V+ Sbjct: 252 EESAATQALKRNGAQIADGFRIRVDLASETSSR---DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11 Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -1 Query: 348 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 710 E+AA + +Q + + ++A+ AS+ D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F DAV AL+LN SEL GR+L+V+ + N +KQ Sbjct: 257 ESAAAKALQRNGAQIAEGFRIRVDLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374 The following BLAST results are available for this feature:
BLAST of CN185660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185660 ID=CN185660; Name=CN185660; organism=Citrus sinensis; type=EST; length=773bpback to top |