CN185660

Overview
NameCN185660
Unique NameCN185660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.603e-25
Identity = 64/148 (43.24%), Postives = 89/148 (60.14%), Query Frame = -1
Query:  303 KEAAALREMQAKVEKEMGAAQDPANVAAN--------QASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 713
            +EA  L E+Q  +E  +    +   +  N           +EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:   56 EEAKKLTELQNNLESNI-TGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          

HSP 2 Score: 26.9498 bits (58), Expect = 5.603e-25
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = -3
Query:  712 ELDEMKKRLKEMEE 753
            EL+EMKKR +EMEE
Sbjct:   43 ELEEMKKRFREMEE 56          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -1
Query:  282 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 617
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  306 MQAKVEKEMGAAQ----DPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 689
            +Q + E+E G A      P  V    +     K EAD RSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  109 VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.555e-22
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = -1
Query:  354 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 611
            EAD RSV+VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.129e-21
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = -1
Query:  354 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 629
            ++ SKE  EAD RSVFVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20
Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = -1
Query:  255 KEAAALREMQAKVEKEMGAAQDPANVAANQ--ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGK 713
            K+   L E+  K+  E G  Q    ++  +  A + EADSRS+FVGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY    SP   +GY K
Sbjct:   25 KQELELDELVGKLSIE-GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNK 195          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = -1
Query:  354 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 710
            E+A L ++Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   27 ESAILEQIQNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 48/120 (40.00%), Postives = 77/120 (64.17%), Query Frame = -1
Query:  354 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 710
            E+A L+++Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   21 ESAILQQIQNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  381 KEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 713
            +E+AA + ++    +     +   ++A+  +S+   D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL+LN SEL GR+L+V+
Sbjct:  252 EESAATQALKRNGAQIADGFRIRVDLASETSSR---DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360          
BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 45/122 (36.89%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  348 EAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 710
            E+AA + +Q    +     +   ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  257 ESAAAKALQRNGAQIAEGFRIRVDLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374          
The following BLAST results are available for this feature:
BLAST of CN185660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PABP2_DICDI5.603e-2543.24Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPA2A_XENLA9.234e-2549.58Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
EPAB2_HUMAN1.333e-2345.99Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
EPAB2_RAT9.555e-2257.47Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE2.129e-2155.79Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST4.015e-2037.79RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL7.571e-1941.67Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL1.291e-1840.00Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN5.255e-1237.50RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]
RBM34_MOUSE1.529e-1136.89RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185660 ID=CN185660; Name=CN185660; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTCCAATTCAACAAGAAATTCCCTTTAGTTCATGC
TAATAATGTTTGATCATTCAAGACATCAATAATAAACATGTAGCTAATAA
ATCCTTTGTTTCCTATCTAAAGCAGGATACATAAGCACCATGATACATTG
AATTTTTCAGTTTATGGATGATCCACAAATGTCACCATCTTCAACAGGAG
CACAATCTGCTAGTAGTAGGGCATGTACCTCATTGGCCTTCTGAACCTCG
GAACCTTCCCATATCCATAAGGTGAATAGAAATAAGGAGGTACATAGGGC
CTCCTGCCTCGGTACCCCATGTAAGGATTGAAACGCCTTGGACGATACTG
CTTCATACCAGGGACATTTGTCCTCTTAGGTAAAACCTTCAGTTGACGGC
CATGTAATTCAGACTCATTCAACTGGAGAGCCTCTTGAACAGCATCTATT
TCAAGGAATTCCACATAAGCAAAACCCTTTGGCTGGCCAAACTTGTCTGT
CAAAATAGTTACCCTGTTTACAGTACCACAGGATTGGAAATGTTGCTGCA
CTTCTTCAGGAGTGCATGCATAATCTACATTGCCAACAAAGACTGATCGT
GAATCTGCCTCTTCTTTGCTTGCTTGATTAGCAGCCACATTAGCAGGATC
TTGAGCAGCGCCCATCTCTTTCTCGACCTTAGCTTGCATCTCACGAAGAG
CAGCAGCTTCCTTCCTCCATCTCCTTCAACCGCTTCTTCATCTCATCCAG
CTCCTTGACGGCGTCGTCATCGG
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