CN185630

Overview
NameCN185630
Unique NameCN185630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.397e-31
Identity = 77/226 (34.07%), Postives = 122/226 (53.98%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFAT 713
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VTGG++ G    I   E      + + +++  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKT 227          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 79/224 (35.27%), Postives = 128/224 (57.14%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFAT 713
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDT 225          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 76/226 (33.63%), Postives = 121/226 (53.54%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFAT 713
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VTGG++ G    I   E      + + +++  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKT 227          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 75/226 (33.19%), Postives = 121/226 (53.54%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFAT 713
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +TGG++ G    I   E      + + +++  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKT 227          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 77/218 (35.32%), Postives = 119/218 (54.59%), Query Frame = 3
Query:   63 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFAT 713
            G +KHLK   APK W +      +  KPS+G H     L L LV+R+ LK A   RE   I+   +VLVDG+V  D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N +DG+ +   +      D I L + +++I +  +   G  V++TGG++ G +G +     ++ S   TI I+++   EF T
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLT 220          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 78/223 (34.98%), Postives = 125/223 (56.05%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFAT 713
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + + E +I + + F+ G  V VT G+N  R G I++ +    G  + + I+D  G  F T
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDT 225          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 73/226 (32.30%), Postives = 119/226 (52.65%), Query Frame = 3
Query:   60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFAT 713
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  +TGG++ G    I   E      + + +++  G +F T
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKT 227          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 70/193 (36.27%), Postives = 109/193 (56.48%), Query Frame = 3
Query:   63 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIK 641
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+L++R+ LK A T RE   I+  + +LVDGK R D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L    + D ++FD G+ V+VT GR  GR+G ++
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRVE 197          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 72/193 (37.31%), Postives = 117/193 (60.62%), Query Frame = 3
Query:   66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVDG VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L + E ++ D +KF+ G +VM+TGG + G +G IK+
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKS 190          
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 76/226 (33.63%), Postives = 122/226 (53.98%), Query Frame = 3
Query:   63 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFAT 713
            G  +HLK +NAP++W + +    +  K S GPH     LPL++++R+ L YA T +E   ++ + +  +DG+VR D  +P G MDV+ I   N+ +R++        L  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T
Sbjct:    5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQT 230          
The following BLAST results are available for this feature:
BLAST of CN185630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METM54.397e-3134.0730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_PYRAB7.500e-3135.2730S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM71.279e-3033.6330S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM61.671e-3033.1930S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METS32.182e-3035.3230S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_PYRFU1.083e-2934.9830S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METMP1.083e-2932.3030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_KORCO1.083e-2936.2730S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_ARCFU1.083e-2937.3130S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_DESK17.020e-2933.6330S ribosomal protein S4e OS=Desulfurococcus kamch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185630 ID=CN185630; Name=CN185630; organism=Citrus sinensis; type=EST; length=715bp
GCGAGGGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCC
AGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTAC
CCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGA
GAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGG
TCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGGAA
AAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCA
TGAGTTTGCAACTCG
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