CN185630
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 644 H+ R P ++ K + +P++GPH + +PL +V+R+ LK A T RE I+ VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 73/190 (38.42%), Postives = 98/190 (51.58%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 632 HL+R AP W + K GG + KPS GPH LPL +V+R+ L+YA T RE I+ + ++ VDG VR D +P G MDV+ I T E +R++ D + L + EA KL +V G ++ +DGR I PD IK DTI DLE I I +G + +VT G N G G Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 632 HL++ AP W + K GG +A +PS+GPH LPL +V+R+ L+YA T RE I+ + ++ VDG VR D +P G MDVV I T E +R++ D + L + EA K +V G ++ +DGR + P + IK DT+ DLE I + +G + +VT G N G VG Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 623 HL+R +P W + K GG +A +PS GPH +PL LV+R+ L+YA T RE I+ + ++ VDG VR + +P G MDVV I T E +R++ D + + L + EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G +VT G N G Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.857e-22 Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFAT 713 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+G+ G D+VSIPK+ +++R+L D KGR + ++ A +L K+ + + G +N DG + D K+ D+I L L+E N+I D F GN+ M+ GG++ G VG I GS I ++ G F T Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFET 219
BLAST of CN185630 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22 Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIK-----NREKHKGSFETI 677 H+ R AP L K + + + GPHK E +PL L+L++ L A T RE ++++ ++VDG+VR D +P G MDV+SIP ++ FR++ D + E+AK+K ++ + + G +N DGR I P + + T+K+++ I + G ++ GGRN G G+IK +K K S TI Sbjct: 3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTI 213 The following BLAST results are available for this feature:
BLAST of CN185630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185630 ID=CN185630; Name=CN185630; organism=Citrus sinensis; type=EST; length=715bpback to top |