CN185629

Overview
NameCN185629
Unique NameCN185629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = -3
Query:  314 FRLL*DTKGGFGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 742
            FR+L      F LH + +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G I ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:  100 FRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = -3
Query:  314 FGLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 712
            F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:  110 FTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = -3
Query:  314 GLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 709
            GL  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:  111 GLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CN185629 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = -3
Query:  314 GLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 709
            GL  +  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ + E +I ++I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:  111 GLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
The following BLAST results are available for this feature:
BLAST of CN185629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4E_AERPE9.008e-1434.8730S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU1.177e-1333.5730S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_DESK11.177e-1336.1730S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_STAMF2.007e-1334.7230S ribosomal protein S4e OS=Staphylothermus marin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001K04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185629 ID=CN185629; Name=CN185629; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTCGATAAAGAGATACATGAACTCAGTTTAGATCG
CTGAAAATAACATCCACCAAATAGTAGCTCATTTAAAAAAGGACAAAGCA
GGTTCAAAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTT
TGCATCGGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAA
CAAGAAAAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTA
AGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACA
ACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTC
CCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGC
ATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCT
TGATGATTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGACAATA
TTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTC
AAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGG
TACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGG
ACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGA
ATGGAGACCGAAGCCACCCTTGGTGTCCTAAAGGAGACGGAAGT
back to top