CN185616

Overview
NameCN185616
Unique NameCN185616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.012e-16
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = -1
Query:  191 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFK--AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 460
            + TV ++ VV+FSK++CP+C   K +F++L +  +   +EL++  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  191 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 460
            Q  + SN + +FSKT+CP+ +  K +F+ L      +EL+   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = -1
Query:  191 RFRIKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFK---AIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 511
            RF    K  ++  +   ++ +    V V +KT+CP+C  ++  LFQ+L V       +EL++ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L + GKL  +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  173 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 448
            S  +VV+F  + C  C  VK LF +LGV++   E++K+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = -1
Query:  185 TEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 484
            T +A    ++ +S+N V VFSK+FCPFC + K    +    +KA EL+K  +GSDIQ+ L E T Q TVP++F   + IGG      L   G L  ++ E
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -1
Query:  191 TEMALPKAQETVSSNSVVVFSKTFCPFC-VSVKELFQQLGVTFKAI---ELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 484
            ++  +   ++ ++ N + V SKT+CP+C  ++  LF++L V    +   +LN   +G+DIQ+AL E  GQ+TVPN++I GKHIGG D    L   G+L  LL
Sbjct:    3 SQETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELL 104          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.601e-14
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  173 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 460
            Q+ +S  SVV+FSK  C    ++K LF  LGV     EL++ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.048e-13
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  173 EMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-----KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 481
            E A  + +   S ++VVVFS + C  C +VK LF  +GV     EL+ +  G D++ ALA   G        VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.048e-13
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = -1
Query:  173 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 472
            + +     +  +VV+FS + C  C +V  LF +LGV    +EL+++  G +++ ALA   G+   VP VFIGG+ +G  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of CN185616 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.368e-13
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = -1
Query:  173 DKEDTEMALPKAQETV----SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 496
            ++E+   A+    E V    S N+VVVFS + C  C  VK L   LGV     EL++ +  +DIQ+AL++    GQ  VP VF+GG+ +GG +   A H  G LVPLL +AGA+
Sbjct:   77 EEEEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGAL 190          
The following BLAST results are available for this feature:
BLAST of CN185616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GRXC8_ORYSJ1.012e-1642.39Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXS6_ORYSJ8.570e-1641.11Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX2_YEAST8.570e-1640.54Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GRXC2_ORYSJ1.119e-1547.31Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GLRX2_SCHPO5.555e-1540.00Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX1_YEAST9.475e-1539.22Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GRXS3_ARATH3.601e-1443.75Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC5_ORYSJ1.048e-1342.59Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC1_ORYSJ1.048e-1338.61Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXC9_ORYSJ1.368e-1341.23Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185616 ID=CN185616; Name=CN185616; organism=Citrus sinensis; type=EST; length=532bp
ATGACAGATTTCAACATAAAACAGAAACTGAACAAAAAACTGCATTGGAA
ATTACTCAAATAAGCATAATTTCATGTTTAATTCAGACAGATTAAGCACT
ACCAACACATTCTTTATTTATTACTAGAATTAACAGGCAGACAATAGCCA
TCCATCAGGCAGCTGTCTTGGCAACAGCTCCAGCTTCAGTGAGCAGAGGA
ACCAGCTTCCCTTCCCTGTGCAGTGCAGTAGTTGAATCGCAGCCACCAAT
GTGTTTCCCTCCGATGAAGACATTTGGAACAGTTTTCTGTCCAGTCCACT
CAGCTAGAGCTGATTGAATGTCACTTCCATCACTTTCTTTGTTCAGTTCA
ATGGCCTTGAAAGTGACTCCGAGTTGCTGAAACAGCTCTTTGACACTCAC
GCAGAACGGACAAAACGTTTTGCTGAAAACGACGACGGAATTGGAGGAAA
CGGTTTCCTGGGCCTTGGGCAAAGCCATTTCTGTGTCTTCTTTGTCTTTG
ATTCGAAATCTCACAAACCCTAAATAAGCTTC
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