CN185607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.713e-61 Identity = 117/219 (53.42%), Postives = 159/219 (72.60%), Query Frame = -1 Query: 156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791 +Y YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F K+ E GI+ F EL M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE++R+G HQAGSDSLLT F K++E FF ++ KY G LYGLG V+NG Sbjct: 59 DYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 1.450e-60 Identity = 110/210 (52.38%), Postives = 160/210 (76.19%), Query Frame = -1 Query: 168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG 791 +Y YQ L+ NVD+LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F ++KE FF S++ KY G LYGLG Sbjct: 59 DYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 1.450e-60 Identity = 110/210 (52.38%), Postives = 160/210 (76.19%), Query Frame = -1 Query: 168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG 791 +Y YQ L+ NVD+LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F ++KE FF S++ KY G LYGLG Sbjct: 59 DYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.039e-58 Identity = 118/214 (55.14%), Postives = 154/214 (71.96%), Query Frame = -1 Query: 165 YHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRKLKENFF-SSSLEKYAGVLYGLGV 788 Y Y LKSNVD L LIQ+GLT SD +GNLP G K +W+FNFR+FDV D A DSIELL++ GI+F +N G+++ RF ELMMSSG++ ++S+ WVTFHS YDFGYL+K+LT + LP EF L+R +F VYD+KH+M+FC L+GGL+++A LEV R VG CHQAGSDSLLT F+++++ +F EK+AGVLYGL V Sbjct: 64 YLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.560e-57 Identity = 117/212 (55.19%), Postives = 152/212 (71.70%), Query Frame = -1 Query: 165 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRKLKENFF-SSSLEKYAGVLYGLGV 782 Y LK+NVD L LIQ+GLT SD NGNLP G D + +W+FNFR+FDV D A DSIELL++ GI+F +N G+++ RF ELMMSSG+V ++ + WVTFHS YDFGYL+K+LT + LP EF ++R+ F VYD+KH+MKFC L GGL+++A LEV R VG CHQAGSDSLLT F+++++ +F EK+AGVLYGL V Sbjct: 68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.899e-52 Identity = 102/209 (48.80%), Postives = 145/209 (69.38%), Query Frame = -1 Query: 168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE-KYAGVLYGLG 791 +YHYQTL++NVD LK+IQ+GL SDE GN P + C WQFNF F++ +D++A +SIELL +SGI+F K+ E+GI+ F EL++ SG+VL + + W+TFHSGYDF YLLK +T LP EF+ ++ IYFP YDIK++MK + GL +A+ L++ R+G HQAGSD+LLTA F +++ +F S++ + LYGLG Sbjct: 69 DYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGLG 272
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44 Identity = 97/216 (44.91%), Postives = 141/216 (65.28%), Query Frame = -1 Query: 168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYA----GVLYGLG 791 +++YQ + NV+MLKLIQ+G ++ G LP G VWQFNF F ED+F+++S+E+L+Q+GI+FT GI FGEL+ +SG++ + W+TF SGYDFGYLLK +T +LP + FF + FPT +DIK L++ N L GGL ++A+ L+V+R G+ HQAGSD+LLTA+TF K+K+ FF + + A G ++GLG Sbjct: 70 DFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLG 280
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 5.020e-37 Identity = 85/227 (37.44%), Postives = 127/227 (55.95%), Query Frame = -1 Query: 171 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQAGSDSLLTASTF---RKLKENFFSSSLE--KYAGVLYGL 791 +YHYQT+++NVD L IQLGL+ SD NGN P G WQFNF EFD ++I + +S+ELL++SGINF K+ +GID F +L+M SG+++ DS+ W+T+H+ YD G+L+ +L ++P+ + +F + Y P YD+ + K L LA+ L + R I G SLL +F KL + F + + KY GV+YG+ Sbjct: 207 DYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS---TWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29 Identity = 79/211 (37.44%), Postives = 109/211 (51.66%), Query Frame = -1 Query: 159 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS-MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGLGVEN 782 Y+ +K NV+ KLIQ G T + G + VW+ NF F D SIE L++ G++ K + G+D +G + S + +VTF YDF Y L +L LP+T EF + F VYD K + FC L H GL+KLA+LL++ RVG H AGSDSL+TA F KLK + S + G++YG+G N Sbjct: 57 YRAMKGNVENTKLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFAR--GLIYGIGKSN 258
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.852e-23 Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = -1 Query: 198 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE 791 E Y+ +K NVD LIQLGLT + G K W+ N +F+ ++ + + SI LK +G++ K E GI F M +L++ M WVTF YD YLLK LT + LP+T EF ++ + VYD+K + C+ L GL ++A++L++ RVG H AGSDS LTA F KL + +S E Sbjct: 47 EIRYRDMKFNVDNTHLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLIFDLVNSRKE 238 The following BLAST results are available for this feature:
BLAST of CN185607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185607 ID=CN185607; Name=CN185607; organism=Citrus sinensis; type=EST; length=800bpback to top |