CN185607

Overview
NameCN185607
Unique NameCN185607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.713e-61
Identity = 117/219 (53.42%), Postives = 159/219 (72.60%), Query Frame = -1
Query:  156 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG-----VENG 791
            +Y YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ F++ ED++A DSIELL  SGI F K+ E GI+   F EL M+SG+VL + + W++FHSGYDFGYL+K+LT  NLP+ +++FF ++R++FP +YD+K+LMK C +L GGL ++AE LE++R+G  HQAGSDSLLT   F K++E FF   ++  KY G LYGLG     V+NG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.450e-60
Identity = 110/210 (52.38%), Postives = 160/210 (76.19%), Query Frame = -1
Query:  168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG 791
            +Y YQ L+ NVD+LK+IQLGLTF++E G  P+ G +    WQFNF+ F++ ED+++ DSI+LL  SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT   LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G  HQAGSDSLLT   F ++KE FF  S++  KY G LYGLG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.450e-60
Identity = 110/210 (52.38%), Postives = 160/210 (76.19%), Query Frame = -1
Query:  168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE--KYAGVLYGLG 791
            +Y YQ L+ NVD+LK+IQLGLTF++E G  P+ G +    WQFNF+ F++ ED+++ DSI+LL  SG+ F K+ E GID + F EL+M+SG+VL D++ W++FHSGYDFGY++KLLT   LP+ + EFF+++ ++FP++YD+K+LMK C +L GGL ++A+ L+++R+G  HQAGSDSLLT   F ++KE FF  S++  KY G LYGLG
Sbjct:   59 DYQYQLLRCNVDLLKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLG 263          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.039e-58
Identity = 118/214 (55.14%), Postives = 154/214 (71.96%), Query Frame = -1
Query:  165 YHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFCNS-LHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRKLKENFF-SSSLEKYAGVLYGLGV 788
            Y Y  LKSNVD L LIQ+GLT SD +GNLP  G  K    +W+FNFR+FDV  D  A DSIELL++ GI+F +N   G+++ RF ELMMSSG++ ++S+ WVTFHS YDFGYL+K+LT + LP    EF  L+R +F   VYD+KH+M+FC   L+GGL+++A  LEV R VG CHQAGSDSLLT   F+++++ +F     EK+AGVLYGL V
Sbjct:   64 YLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLEV 277          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.560e-57
Identity = 117/212 (55.19%), Postives = 152/212 (71.70%), Query Frame = -1
Query:  165 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKY--CVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLTASTFRKLKENFF-SSSLEKYAGVLYGLGV 782
            Y  LK+NVD L LIQ+GLT SD NGNLP  G D +   +W+FNFR+FDV  D  A DSIELL++ GI+F +N   G+++ RF ELMMSSG+V ++ + WVTFHS YDFGYL+K+LT + LP    EF  ++R+ F   VYD+KH+MKFC   L GGL+++A  LEV R VG CHQAGSDSLLT   F+++++ +F     EK+AGVLYGL V
Sbjct:   68 YTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.899e-52
Identity = 102/209 (48.80%), Postives = 145/209 (69.38%), Query Frame = -1
Query:  168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE-KYAGVLYGLG 791
            +YHYQTL++NVD LK+IQ+GL  SDE GN P     + C WQFNF  F++ +D++A +SIELL +SGI+F K+ E+GI+   F EL++ SG+VL + + W+TFHSGYDF YLLK +T   LP    EF+ ++ IYFP  YDIK++MK   +   GL  +A+ L++ R+G  HQAGSD+LLTA  F +++  +F  S++ +    LYGLG
Sbjct:   69 DYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQLYGLG 272          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.116e-44
Identity = 97/216 (44.91%), Postives = 141/216 (65.28%), Query Frame = -1
Query:  168 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYA----GVLYGLG 791
            +++YQ +  NV+MLKLIQ+G    ++ G LP  G     VWQFNF  F   ED+F+++S+E+L+Q+GI+FT     GI    FGEL+ +SG++    + W+TF SGYDFGYLLK +T  +LP  +  FF   +  FPT +DIK L++  N     L GGL ++A+ L+V+R G+ HQAGSD+LLTA+TF K+K+ FF  +  + A    G ++GLG
Sbjct:   70 DFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGLG 280          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.020e-37
Identity = 85/227 (37.44%), Postives = 127/227 (55.95%), Query Frame = -1
Query:  171 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGICHQAGSDSLLTASTF---RKLKENFFSSSLE--KYAGVLYGL 791
            +YHYQT+++NVD L  IQLGL+ SD NGN P  G      WQFNF EFD  ++I + +S+ELL++SGINF K+  +GID   F +L+M SG+++ DS+ W+T+H+ YD G+L+ +L   ++P+ + +F   +  Y P  YD+  + K                       L  LA+ L + R  I    G  SLL   +F    KL  + F +  +  KY GV+YG+
Sbjct:  207 DYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPS---TWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.582e-29
Identity = 79/211 (37.44%), Postives = 109/211 (51.66%), Query Frame = -1
Query:  159 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS-MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLEKYAGVLYGLGVEN 782
            Y+ +K NV+  KLIQ G T  +  G +         VW+ NF  F    D     SIE L++ G++  K  + G+D   +G       +  S   + +VTF   YDF Y L +L    LP+T  EF   +   F  VYD K +  FC  L  H GL+KLA+LL++ RVG  H AGSDSL+TA  F KLK  +  S   +  G++YG+G  N
Sbjct:   57 YRAMKGNVENTKLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDSRFAR--GLIYGIGKSN 258          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.852e-23
Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = -1
Query:  198 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSSSLE 791
            E  Y+ +K NVD   LIQLGLT   +       G  K   W+ N  +F+ ++ +  + SI  LK +G++  K  E GI    F    M    +L++    M WVTF   YD  YLLK LT + LP+T  EF   ++ +    VYD+K +   C+ L    GL ++A++L++ RVG  H AGSDS LTA  F KL  +  +S  E
Sbjct:   47 EIRYRDMKFNVDNTHLIQLGLTLFGK-------GITK--TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF---FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLIFDLVNSRKE 238          
The following BLAST results are available for this feature:
BLAST of CN185607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_XENTR1.713e-6153.42CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT8_MOUSE1.450e-6052.38CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN1.450e-6052.38CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CAF1K_ARATH1.039e-5855.14Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH2.560e-5755.19Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1_SCHPO1.899e-5248.80Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_CAEEL1.116e-4444.91CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
POP2_YEAST5.020e-3737.44Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CAF1A_ARATH8.582e-2937.44Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH1.852e-2336.76Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185607 ID=CN185607; Name=CN185607; organism=Citrus sinensis; type=EST; length=800bp
GGCCCCCCTTTTTTAAATAAGTATAAGAAGAATTTATAAATTTAAGTTGC
CAAAAGTATACAATGAAGTGTGGGCTTAAGGCACGGCACACTTACACATA
AAATAAACAGCTTTCTAAACTCCCTTTTTTCCCCCTTCTTTCAATGAGTA
TTTTGTCCATTCTCAACGCCTAAACCATATAAGACACCAGCATATTTTTC
CAAAGAGCTGCTAAAGAAGTTTTCTTTCAATTTTCGGAATGTACTAGCTG
TAAGCAAACTATCTGAACCTGCTTGATGACAAATCCCAACTCTTTCAACT
TCCAACAACTCAGCAAGTTTGTTCAATCCTCCATGAAGGCTATTACAAAA
CTTCATCAAGTGCTTGATATCATACACGGTCGGAAAATAAATTCTGATCA
AATTAAAGAACTCCACTTGCGTATCAGGCAGATTCTGGCACGTCAAAAGC
TTTAGCAAATACCCAAAATCATACCCACTATGAAATGTCACCCAATGCAT
GCTATCACTCAAAACAATCCCAGATGACATCATTAACTCACCAAATCTCA
TTGCATCAATACCTATCTCATTATTTTTTGTAAAATTAATCCCACTTTGT
TTCAAAAGCTCAATCGAATCATTGGCAAAGATATCCTCATTAACATCGAA
CTCCCGAAAATTAAATTGCCAAACACAATATTTATCTGTCCCACAAGTGG
GCAAGTTACCATTCTCATCTGAAAATGTCAGACCCAACTGGATGAGCTTT
AACATATCAACATTGCTTTTCAAAGTTTGGTAGTGATATTCATAAACTGC
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