CN185607

Overview
NameCN185607
Unique NameCN185607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1H_ARATH (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.047e-22
Identity = 74/197 (37.56%), Postives = 96/197 (48.73%), Query Frame = -1
Query:  216 AVYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 800
            A  E  Y  +  +VD  KLIQLGLT  D NG +   GT     W+ NF +F V +D     SIE L+++G++  K  E GI    F   M         ++ WVTFH  YD  YLLK  T + LP T   F   +     +VYD+K +   C  L    GL  LA    + RVG  H AGS++ LTA  F K+   F
Sbjct:   31 ATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIG--GT-----WEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1C_ARATH (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana GN=CAF1-3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 70/199 (35.18%), Postives = 101/199 (50.75%), Query Frame = -1
Query:  207 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLIR-IYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSS 791
            E  Y+ +K NVD   LIQLG T  D  G   T        W+ N  +FD ++    + SI  LK +G+N  K  E GI    F              + WV F   YD  YL+K LT  + LP+T+ EF   ++ +    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F KL  +  +S
Sbjct:   51 EIRYRDMKFNVDNTHLIQLGFTLFDRRGFAKT--------WEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 241          
BLAST of CN185607 vs. ExPASy Swiss-Prot
Match: CAF1D_ARATH (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana GN=CAF1-4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 69/199 (34.67%), Postives = 101/199 (50.75%), Query Frame = -1
Query:  207 EYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGELMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNLI-RIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFSS 791
            E  Y+ +K NVD   LIQLG T  D  G   T        W+ N  +F+ ++    + SI  LK +G+N  K  E GI    F              + WV F   YD  YL+K LT  + LP+T+ EF   + ++    V+D+K + + C+ L    GL ++A++L+++RVG  H AGSDS LTA  F KL  +  +S
Sbjct:   46 EIRYRDMKFNVDNTHLIQLGFTLFDRRGITKT--------WEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFFRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKLTFDLLNS 236          
The following BLAST results are available for this feature:
BLAST of CN185607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1H_ARATH2.047e-2237.56Putative CCR4-associated factor 1 homolog 8 OS=Ara... [more]
CAF1C_ARATH2.674e-2235.18Putative CCR4-associated factor 1 homolog 3 OS=Ara... [more]
CAF1D_ARATH1.327e-2134.67Putative CCR4-associated factor 1 homolog 4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185607 ID=CN185607; Name=CN185607; organism=Citrus sinensis; type=EST; length=800bp
GGCCCCCCTTTTTTAAATAAGTATAAGAAGAATTTATAAATTTAAGTTGC
CAAAAGTATACAATGAAGTGTGGGCTTAAGGCACGGCACACTTACACATA
AAATAAACAGCTTTCTAAACTCCCTTTTTTCCCCCTTCTTTCAATGAGTA
TTTTGTCCATTCTCAACGCCTAAACCATATAAGACACCAGCATATTTTTC
CAAAGAGCTGCTAAAGAAGTTTTCTTTCAATTTTCGGAATGTACTAGCTG
TAAGCAAACTATCTGAACCTGCTTGATGACAAATCCCAACTCTTTCAACT
TCCAACAACTCAGCAAGTTTGTTCAATCCTCCATGAAGGCTATTACAAAA
CTTCATCAAGTGCTTGATATCATACACGGTCGGAAAATAAATTCTGATCA
AATTAAAGAACTCCACTTGCGTATCAGGCAGATTCTGGCACGTCAAAAGC
TTTAGCAAATACCCAAAATCATACCCACTATGAAATGTCACCCAATGCAT
GCTATCACTCAAAACAATCCCAGATGACATCATTAACTCACCAAATCTCA
TTGCATCAATACCTATCTCATTATTTTTTGTAAAATTAATCCCACTTTGT
TTCAAAAGCTCAATCGAATCATTGGCAAAGATATCCTCATTAACATCGAA
CTCCCGAAAATTAAATTGCCAAACACAATATTTATCTGTCCCACAAGTGG
GCAAGTTACCATTCTCATCTGAAAATGTCAGACCCAACTGGATGAGCTTT
AACATATCAACATTGCTTTTCAAAGTTTGGTAGTGATATTCATAAACTGC
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