CN185606

Overview
NameCN185606
Unique NameCN185606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  206 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 571
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A++I+IGD    LSNG+YK+ LHR  VN+ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  206 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 571
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A++I+IGD    LSNG+YK+ LHR  VN+ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 47/126 (37.30%), Postives = 77/126 (61.11%), Query Frame = -2
Query:  179 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEP---PADTVVGPLPQLVDDENPPKYKAKKFKDYS 547
            +YYPPCP+PDL LG+  H+D S LT+L+ + + GLQV  D  W+D   +P AL++++GD +++++N K+ +V HR   N    R+S   F          V GP+ +++ +ENPP Y+     +Y+
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYA 346          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.094e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = -2
Query:  176 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 574
            ++ + ++++N+YPPC  PDL LG   H D S+LT+L  + V GLQVF D++W   +  P A +++IGD    LSNG +K+ LHR  VN++  R S   FL P  D VV P   +++     K K +K+ D+++
Sbjct:  219 EENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILE-----KMKTRKYPDFTW 346          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.865e-22
Identity = 51/130 (39.23%), Postives = 81/130 (62.31%), Query Frame = -2
Query:  182 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKD-KTRMSWPVFLEPPADTVVGPLPQLV----DDENPPKYKAKKFKDY 553
            K++ YPPCP PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++++++GDQ+E+++NGKYK+V HR     D + RMS   F  P +D+V+ P P+L+    + E    Y    F+DY
Sbjct:  158 KVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDY 287          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = -2
Query:  191 EEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIE---YMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKF 679
            +EY + +R++ +K+              +K+A  GD      +  K+++YPPCPR DL  G+ AHTD   + +L  ++ V GLQ+ KD RWID + + +A++I+ GDQIE+LSNG+YK+  HR        R S   F  P     + P      +E  P     KF
Sbjct:  113 KEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKF 279          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = -2
Query:  206 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 574
            ++ + ++++NYYPPC +PDL LG   H D ++LT+L  + V GLQVF +++W   +  P A +++IGD    LSN +YK+ LHR  VN +  R S   FL P  D VV P  +L+D     +Y
Sbjct:  221 EENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRY 343          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  182 LGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 511
            LG+  H+D + LT+L+  NEV GL + KD++W+  K I  A +++IGD IEI+SNG YK++ HR  +N DK R+S   F +P   T +GPLP LV  EN  KYK   ++DY
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV-KENGVKYKTIDYEDY 332          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = -2
Query:  206 GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 580
            G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  199 GNDSI---MRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -2
Query:  206 MLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 559
            ++++NYYP C RP   LG   H D ++LT+L  + V GL+V+ + RW   +  P AL++++GD    LSN +Y++ LHR  VN    R S   FL P  DTVV P  +LVDD +P  Y
Sbjct:  213 IMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330          
The following BLAST results are available for this feature:
BLAST of CN185606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAOX2_ORYSJ8.373e-2341.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI8.373e-2341.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH1_ARATH8.373e-2337.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX2_ARATH1.094e-2239.10Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCO1_ARATH1.865e-2239.231-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO_MUSAC5.427e-2234.131-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
GAOX1_ARATH7.088e-2240.65Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
NCS1_COPJA2.694e-2146.85S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAO1B_WHEAT4.595e-2144.00Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAOX1_ORYSJ6.001e-2142.37Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185606 ID=CN185606; Name=CN185606; organism=Citrus sinensis; type=EST; length=755bp
GAGGAAGGATTATTTATTATTGCTAACACCCGCGATTACATTTCAGAAAC
AAGATCGCAACAACAAACAAGCATCGCTAACGTACAGTGACGAGATCAAA
CATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCATAATGAAAAATCT
ACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTG
GCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACC
CACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCG
TCTTGTCCTTGTTAACAGTGGTTCTATGCAGCACGGCTTTGTACTTGCCA
TTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGATGAGAGCGTTCGG
GATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAG
GAACTTCATTGGGCACAAGAACGGTGAGGGCGGAAAGATCAGTGTGGGCC
ACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCGGATAGTAATTAAT
CTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCTTCTTTCAAAACAC
CTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAACAACTTATCCACC
ACCTCCCTCATGTACTTTGCATACTCCTCATTCACCGCTCTGCAGCGCAC
GCACCGTTTTCAAGGAATCCTTTGAAAATTAATTATTGATACATTTTGTT
TAAAA
back to top