CN185606

Overview
NameCN185606
Unique NameCN185606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = -2
Query:  182 EEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDD-IEYMLKINYYPPCPRPD---LALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 679
            EEY K ++EV  K+                     D+  +  L++N+YP         + +G   HTD   ++VL  N   GLQ+  KD  W+      ++  I++GD +++++NG++K+V HR   +  ++R+S   F  PP    + PLP LV +++   YK   +  Y
Sbjct:  142 EEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQY 312          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 42/141 (29.79%), Postives = 69/141 (48.94%), Query Frame = -2
Query:  182 MLKINYYPPCPR--------------PDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 559
            +L+IN+YPP  +               +  +G   H+D   LT+L  N V GLQ+      WI     P+   + +GD +++L+NG++ +V HR   N  K RMS   F  PP + ++ PL ++V   +P  Y+   +  Y
Sbjct:  174 LLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQY 314          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 42/125 (33.60%), Postives = 65/125 (52.00%), Query Frame = -2
Query:  182 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 556
            L++N Y P        G+V HTD S LT+L  +++ GL++  + +WI  K    AL ++IGD  + LSNG Y++V HR     +  RMS   F+ P  +T +           P KY+   F++Y
Sbjct:  196 LRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEIDCFGY------PKKYRRFSFREY 314          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 37/128 (28.91%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  182 LKINYYPPCPRPDLA--LGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 556
            L++N+YP      +   +G   HTD   +++L  N+  GLQ+  KD  W+D     ++  + +GD +++++NG++K+V HR   N  ++R+S   F  PP    + PL  LV  ++   Y    +  Y
Sbjct:  180 LRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQY 307          
BLAST of CN185606 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  233 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFK--DDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQL 556
            +++  YP  P     LGV  HTD  ALT++  + V GL++     + ++     P ALI ++GD + IL+N +YK+ +HR   N    R + P FL+   D VV PLP L
Sbjct:  259 IRLLRYPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CN185606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX2_ARATH1.026e-1227.49Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX2_PEA1.340e-1229.79Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX7_ARATH2.286e-1233.60Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX3_ARATH3.899e-1228.91Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ISP7_SCHPO1.935e-1136.36Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185606 ID=CN185606; Name=CN185606; organism=Citrus sinensis; type=EST; length=755bp
GAGGAAGGATTATTTATTATTGCTAACACCCGCGATTACATTTCAGAAAC
AAGATCGCAACAACAAACAAGCATCGCTAACGTACAGTGACGAGATCAAA
CATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCATAATGAAAAATCT
ACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTG
GCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACC
CACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCG
TCTTGTCCTTGTTAACAGTGGTTCTATGCAGCACGGCTTTGTACTTGCCA
TTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGATGAGAGCGTTCGG
GATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAG
GAACTTCATTGGGCACAAGAACGGTGAGGGCGGAAAGATCAGTGTGGGCC
ACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCGGATAGTAATTAAT
CTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCTTCTTTCAAAACAC
CTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAACAACTTATCCACC
ACCTCCCTCATGTACTTTGCATACTCCTCATTCACCGCTCTGCAGCGCAC
GCACCGTTTTCAAGGAATCCTTTGAAAATTAATTATTGATACATTTTGTT
TAAAA
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