CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEF5 (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 41/108 (37.96%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGKSVQE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEE4 (30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ +A + ++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G+TV E
Sbjct:   58 PAAIQKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGKTVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ALTMD (30S ribosomal protein S5 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V+ +  HT+ H I+  +  +KVY+ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  + +P  V  K G +V E
Sbjct:   57 PAAIQKAMEKARRNMVDVDLNG-HTLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLSKCYGSTNPINVVRATINALTEMNSPAKVAAKRGLSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_MANSM (30S ribosomal protein S5 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  HE  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALHEG-TLQHPVKGIHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAES2 (30S ribosomal protein S5 OS=Haemophilus somnus (strain 2336) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H I+ S+  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMITVALNEG-TLQHPIKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAES1 (30S ribosomal protein S5 OS=Haemophilus somnus (strain 129Pt) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H I+ S+  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMITVALNEG-TLQHPIKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_BAUCH (30S ribosomal protein S5 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA +K  +N+  +  +   T+ H+I+  +  ++V++ PA   TG+ AG  ++ +L + G +NV +K  GS NP N V+A   ALN +++P+ +  K G+T+ E
Sbjct:   57 PTAIQKAMDKARRNMTTIVLNSGGTLQHSIKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVTGIRNVLAKTYGSTNPINVVRATINALNKMKSPEMIAAKRGKTIEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ACTP2 (30S ribosomal protein S5 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++ S+  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_LEGPL (30S ribosomal protein S5 OS=Legionella pneumophila (strain Lens) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            PIA+QKA ++  +N+ Y+      TI H I  +Y  +KV++ PA   TG+ AG  ++ +L + G +N+ +K +GS NP N V+A   AL  I TP  V  K G+TV E
Sbjct:   58 PIAIQKAMDQAKKNMVYIPLSGT-TIFHEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRGKTVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_LEGPH (30S ribosomal protein S5 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            PIA+QKA ++  +N+ Y+      TI H I  +Y  +KV++ PA   TG+ AG  ++ +L + G +N+ +K +GS NP N V+A   AL  I TP  V  K G+TV E
Sbjct:   58 PIAIQKAMDQAKKNMVYIPLSGT-TIFHEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRGKTVEE 164          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_PSEF52.023e-1437.9630S ribosomal protein S5 OS=Pseudomonas fluorescen... [more]
RS5_PSEE42.023e-1438.8930S ribosomal protein S5 OS=Pseudomonas entomophil... [more]
RS5_ALTMD2.642e-1440.7430S ribosomal protein S5 OS=Alteromonas macleodii ... [more]
RS5_MANSM4.506e-1439.8130S ribosomal protein S5 OS=Mannheimia succinicipr... [more]
RS5_HAES24.506e-1440.7430S ribosomal protein S5 OS=Haemophilus somnus (st... [more]
RS5_HAES14.506e-1440.7430S ribosomal protein S5 OS=Haemophilus somnus (st... [more]
RS5_BAUCH4.506e-1434.2630S ribosomal protein S5 OS=Baumannia cicadellinic... [more]
RS5_ACTP24.506e-1439.8130S ribosomal protein S5 OS=Actinobacillus pleurop... [more]
RS5_LEGPL5.885e-1439.8130S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_LEGPH5.885e-1439.8130S ribosomal protein S5 OS=Legionella pneumophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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