CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAAC (30S ribosomal protein S5 OS=Staphylococcus aureus (strain COL) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAAB (30S ribosomal protein S5 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAA9 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAA8 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAA3 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAA2 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STAA1 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            P A++KA E   ++L  V R  E T  H I   Y    V++ PA   TG+ AG  V+ +L LAG  ++ SK +GS  P N V+A    L  ++  +DV +  G+TV E Y
Sbjct:   57 PEAIKKAVEAAKKDLVVVPR-VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELY 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SILPO (30S ribosomal protein S5 OS=Silicibacter pomeroyi GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 34/108 (31.48%), Postives = 61/108 (56.48%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A++KA E+  + +  V+  E  T+ H I+  +   KV +  AP  TG+ AG  ++ +  + G K+V SK +GS NP+N ++A    L   ++P+ V ++ G+ V +
Sbjct:   67 PEAIRKATEQAKRQMIRVQLREGRTLHHDIEGRHGAGKVVMRAAPEGTGIIAGGPMRAVFEMLGVKDVVSKSLGSANPYNMIRATIDGLKKEQSPRSVAQRRGKKVAD 174
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_RHOPB (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            P A++KA E   +NL  V   E  T+ H I   +   +VYL  AP  TG+ AG  ++ +    G ++V +K +GS NP+N V+A F AL   ++P+ V
Sbjct:   68 PEAIRKATESAKRNLTRVPLREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSV 165
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_RHOP5 (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDV 298
            P A++KA E   +NL  V   E  T+ H I   +   +VYL  AP  TG+ AG  ++ +    G ++V +K +GS NP+N V+A F AL   ++P+ V
Sbjct:   68 PEAIRKATESAKRNLTRVPLREGRTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSIGSSNPYNMVRATFDALKHQDSPRSV 165
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_STAAC6.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAB6.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA96.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA86.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA36.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA26.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA16.090e-1137.2730S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_SILPO6.090e-1131.4830S ribosomal protein S5 OS=Silicibacter pomeroyi ... [more]
RS5_RHOPB6.090e-1136.7330S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_RHOP56.090e-1136.7330S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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