CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEU2 (30S ribosomal protein S5 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  +++P+ +  K G+ V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKGMQSPESIAAKRGKRVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSESM (30S ribosomal protein S5 OS=Pseudomonas syringae pv. tomato GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  +++P+ +  K G+ V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKGMQSPESIAAKRGKRVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEPF (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 41/108 (37.96%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L A+++P+ +  K G  V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRGLRVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PASMU (30S ribosomal protein S5 OS=Pasteurella multocida GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H I+ ++  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPIKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAEDU (30S ribosomal protein S5 OS=Haemophilus ducreyi GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++ S+  ++V++ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBPA (30S ribosomal protein S5 OS=Vibrio parahaemolyticus GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +N+  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL ++++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRNMTTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBHB (30S ribosomal protein S5 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +N+  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL ++++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRNMTTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALGSMKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEA6 (30S ribosomal protein S5 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +NL  V+ +  +T+ H I+  +  +KVY+ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  + +P  V  K G +V +
Sbjct:   58 PAAIQKAMEKARRNLVDVDLNG-NTLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLSKCYGSTNPINVVRATINALTEMTSPDQVAAKRGLSVTQ 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_LARHH (30S ribosomal protein S5 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA ++  +++  +      T+ HA+   +  T V++ PAP  +G+KAG  ++ +    G  NV +KV GS NP+N V+A    L  I TP D+  K G+TV E
Sbjct:   59 PVAVQKAMDQARRSMVKIPLRNG-TLQHAVIGKHGATTVFMQPAPEGSGVKAGGAMRQVFDAIGVHNVSAKVHGSTNPYNVVRATLNGLMKINTPADIAAKRGKTVAE 165          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAHCH (30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 38/108 (35.19%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QKA +   +N+  V  +  +T+ + ++  +   KV++ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V+A F+ L A++ P+++  K G+TV E
Sbjct:   58 PVAIQKAMDAARKNMITVTLNG-NTLQYPVKARHGSAKVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVRATFEGLKAMQAPEEIAAKRGKTVEE 164          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_PSEU21.004e-1337.0430S ribosomal protein S5 OS=Pseudomonas syringae p... [more]
RS5_PSESM1.004e-1337.0430S ribosomal protein S5 OS=Pseudomonas syringae p... [more]
RS5_PSEPF1.004e-1337.9630S ribosomal protein S5 OS=Pseudomonas fluorescen... [more]
RS5_PASMU1.004e-1339.8130S ribosomal protein S5 OS=Pasteurella multocida ... [more]
RS5_HAEDU1.004e-1339.8130S ribosomal protein S5 OS=Haemophilus ducreyi GN... [more]
RS5_VIBPA1.311e-1339.6230S ribosomal protein S5 OS=Vibrio parahaemolyticu... [more]
RS5_VIBHB1.311e-1339.6230S ribosomal protein S5 OS=Vibrio harveyi (strain... [more]
RS5_PSEA61.311e-1339.8130S ribosomal protein S5 OS=Pseudoalteromonas atla... [more]
RS5_LARHH1.311e-1336.1130S ribosomal protein S5 OS=Laribacter hongkongens... [more]
RS5_HAHCH1.311e-1335.1930S ribosomal protein S5 OS=Hahella chejuensis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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