CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_COXBU (30S ribosomal protein S5 OS=Coxiella burnetii GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V  +   T+ HAI+ ++  + V + PA   TG+ AG  ++ I  + G +NV +K +GS NP N V+A FK L  +ETP+ V  K G+ + E
Sbjct:   59 PSAIQKATENARRNMISVPLYGA-TLHHAIKATHASSTVLMLPASEGTGVIAGNAMRAIFEVMGVQNVLAKCIGSSNPINVVRATFKGLKQMETPESVAAKRGKAIEE 165          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RT05_HUMAN (28S ribosomal protein S5, mitochondrial OS=Homo sapiens GN=MRPS5 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            A +KA  +   +LHY+ER+E+HTI H I   +K+T + +   P   G++  R + TI  L G K++ +KV GS N  +  + LF+ L+  ET + + +K G  VVE
Sbjct:  267 AFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVE 372          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSE14 (30S ribosomal protein S5 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +A+++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  +++P+ +  K G+ V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNCT-TLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKGMQSPESIAAKRGKRVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBFM (30S ribosomal protein S5 OS=Vibrio fischeri (strain MJ11) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QK+ EK  +N+  +  +E  T+ HA++  +  +KVY+ PA   TG+ AG  ++ +L + G +NV +K  GS NP N V+A    L+++++P+ V  K G TV
Sbjct:   57 PAAIQKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPAAEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATIAGLSSVKSPEMVAAKRGLTV 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBF1 (30S ribosomal protein S5 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QK+ EK  +N+  +  +E  T+ HA++  +  +KVY+ PA   TG+ AG  ++ +L + G +NV +K  GS NP N V+A    L+++++P+ V  K G TV
Sbjct:   57 PAAIQKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPAAEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATIAGLSSVKSPEMVAAKRGLTV 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STRMK (30S ribosomal protein S5 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ H I+  +   +V++ PA   TG+ AG  ++ +L   G KNV +K  GSRNP N V+A  K L+A ++P  +  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLVSVDLNNG-TLWHTIKDGHGAARVFMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKATGSRNPINLVRATVKGLSAAQSPARIAAKRGKKVEE 176          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_STRM5 (30S ribosomal protein S5 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P+A+QK+ E+  +NL  V+ +   T+ H I+  +   +V++ PA   TG+ AG  ++ +L   G KNV +K  GSRNP N V+A  K L+A ++P  +  K G+ V E
Sbjct:   70 PVAIQKSMEQARKNLVSVDLNNG-TLWHTIKDGHGAARVFMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKATGSRNPINLVRATVKGLSAAQSPARIAAKRGKKVEE 176          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEAM (30S ribosomal protein S5 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +E  T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  V  K G +V E
Sbjct:   59 PAAIQKAMEKARRNMVTVELNEG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALTHMKSPAQVAAKRGLSVEE 165          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSYIN (30S ribosomal protein S5 OS=Psychromonas ingrahamii (strain 37) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V+  + +T+ H I+  +  +KVY+ PA   TG+ AG  ++ +L + G +NV SK  GS NP N V+A   AL  + +P+ +  K G +V E
Sbjct:   58 PAAIQKAMEKARRNIRDVQL-KGNTLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVVGVQNVLSKAYGSTNPINVVRATLDALENMNSPEQIAAKRGLSVNE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAEIN (30S ribosomal protein S5 OS=Haemophilus influenzae GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_COXBU1.311e-1337.9630S ribosomal protein S5 OS=Coxiella burnetii GN=r... [more]
RT05_HUMAN1.712e-1336.7928S ribosomal protein S5, mitochondrial OS=Homo sa... [more]
RS5_PSE141.712e-1337.0430S ribosomal protein S5 OS=Pseudomonas syringae p... [more]
RS5_VIBFM2.236e-1336.7930S ribosomal protein S5 OS=Vibrio fischeri (strai... [more]
RS5_VIBF12.236e-1336.7930S ribosomal protein S5 OS=Vibrio fischeri (strai... [more]
RS5_STRMK2.236e-1337.0430S ribosomal protein S5 OS=Stenotrophomonas malto... [more]
RS5_STRM52.236e-1337.0430S ribosomal protein S5 OS=Stenotrophomonas malto... [more]
RS5_SHEAM2.236e-1339.8130S ribosomal protein S5 OS=Shewanella amazonensis... [more]
RS5_PSYIN2.236e-1337.9630S ribosomal protein S5 OS=Psychromonas ingrahami... [more]
RS5_HAEIN2.921e-1338.8930S ribosomal protein S5 OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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