CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAEIG (30S ribosomal protein S5 OS=Haemophilus influenzae (strain PittGG) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAEIE (30S ribosomal protein S5 OS=Haemophilus influenzae (strain PittEE) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_HAEI8 (30S ribosomal protein S5 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +E  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRGKTVDE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBSL (30S ribosomal protein S5 OS=Vibrio splendidus (strain LGP32) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +N+  V  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   57 PAAIQKAMEKARRNMVTVALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINVVRATIGALVDVKSPEMVAAKRGLTV 161
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSYCK (30S ribosomal protein S5 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  VE ++  T+ H I+  +  +KVY+ PA   TG+ AG  ++ +L +AG K+V +K  GS N  N V+A F  L  + TP+ +  K G++V E
Sbjct:   62 PAAIQKALEAAKRNMITVELNDA-TLYHPIKARHGASKVYMQPASEGTGVIAGGAMRAVLEVAGVKDVLTKCYGSTNTANVVRATFNGLRDMSTPEKMAAKRGKSVDE 168
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSYA2 (30S ribosomal protein S5 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  VE ++  T+ H I+  +  +KVY+ PA   TG+ AG  ++ +L +AG K+V +K  GS N  N V+A F  L  + TP+ +  K G++V E
Sbjct:   62 PAAIQKALEAAKRNMITVELNDA-TLYHPIKARHGASKVYMQPASEGTGVIAGGAMRAVLEVAGVKDVLTKCYGSTNTANVVRATFNGLRDMSTPEKMAAKRGKSVDE 168
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PHOPR (30S ribosomal protein S5 OS=Photobacterium profundum GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QK+ EK  +N+  V  +E  T+ HA++  +  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V+A    L+ + +P+ +  K G +V E
Sbjct:   56 PAAIQKSMEKARRNMVTVALNEG-TLHHAVKGRHTGSKVYMQPASEGTGIIAGGAMRAVLEVAGIRNVLAKAYGSTNPINVVRATIAGLSGMNSPEMIAAKRGLSVKE 162
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ALISL (30S ribosomal protein S5 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QK+ EK  +N+  +  +E  T+ HA++  +  +KVY+ PA   TG+ AG  ++ +L + G +NV +K  GS NP N V+A    L ++++P+ V  K G TV
Sbjct:   57 PAAIQKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPASEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATILGLTSVKSPEMVAAKRGLTV 161
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ACTSZ (30S ribosomal protein S5 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 41/108 (37.96%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  ++  T+ H ++  +  ++V++ PA   TG+ AG  ++ +L +AG +NV SK  GS NP N V+A   AL  +++P+ V  K G+TV E
Sbjct:   57 PAAIQKAMEKARRNMINVALNDG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPETVAAKRGKTVDE 163
[Close]
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBVY (30S ribosomal protein S5 OS=Vibrio vulnificus (strain YJ016) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +N+  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRNMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_HAEIG2.921e-1338.8930S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_HAEIE2.921e-1338.8930S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_HAEI82.921e-1338.8930S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_VIBSL3.814e-1340.5730S ribosomal protein S5 OS=Vibrio splendidus (str... [more]
RS5_PSYCK3.814e-1337.9630S ribosomal protein S5 OS=Psychrobacter cryohalo... [more]
RS5_PSYA23.814e-1337.9630S ribosomal protein S5 OS=Psychrobacter arcticus... [more]
RS5_PHOPR3.814e-1337.0430S ribosomal protein S5 OS=Photobacterium profund... [more]
RS5_ALISL3.814e-1336.7930S ribosomal protein S5 OS=Aliivibrio salmonicida... [more]
RS5_ACTSZ3.814e-1337.9630S ribosomal protein S5 OS=Actinobacillus succino... [more]
RS5_VIBVY4.982e-1339.6230S ribosomal protein S5 OS=Vibrio vulnificus (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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