CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEAE (30S ribosomal protein S5 OS=Pseudomonas aeruginosa GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +  ++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  ++ P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEAB (30S ribosomal protein S5 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +  ++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  ++ P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEA8 (30S ribosomal protein S5 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +  ++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  ++ P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSEA7 (30S ribosomal protein S5 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+ +   T+ +  ++++  +KVY+ PA   TG+ AG  ++ +L +AG +NV +K  GS NP N V A FK L  ++ P+ V  K G++V E
Sbjct:   58 PAAIQKAMEAARRNMIQVDLNGT-TLQYPTKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKNMQAPEAVAAKRGKSVEE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHRVO (30S ribosomal protein S5 OS=Chromobacterium violaceum GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P+A+QKA E+   N+  ++ +   T+ H ++  +  T+V + PA   TG+KAG  ++ I    G  NV +K+ GS NP+N V+A    L+ I TP  +  K G ++
Sbjct:   59 PVAVQKAMEQARHNMMKIKLYNG-TVKHTVEGRHGATRVLIQPAKDGTGVKAGGPMRAIFDAMGIHNVSAKIHGSTNPYNVVRATLDGLSKINTPAQIAAKRGLSI 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ALHEH (30S ribosomal protein S5 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK   N+  V   +  T+ +A+  ++  +KVY+ PA   TG+ AG  ++ +  + G ++V +K +GSRNP N V+A  K L  +++P  V  + G+ V
Sbjct:   57 PAAIQKAMEKARANMKRVHL-DGGTLQYAVTANHGSSKVYMQPASAGTGIIAGGAMRAVFEVVGVQDVLAKAIGSRNPINVVRATIKGLTDVDSPDAVAARRGKKV 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBCM (30S ribosomal protein S5 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +++  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBCH (30S ribosomal protein S5 OS=Vibrio cholerae GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +++  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_VIBC3 (30S ribosomal protein S5 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTV 322
            P A+QKA EK  +++  +  +E  T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P+ V  K G TV
Sbjct:   58 PAAIQKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGLTV 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ROSS1 (30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRT 319
            P A++K  E   +NL  V      TI H +Q  +  +KV L PA   TG+ AGR V+ +L +AG K+V SK  GS NP N VKA FKAL+A+ + ++     G T
Sbjct:   59 PEAIRKGVEAAKKNLIRVPLSGT-TIPHEVQMEFAASKVRLLPAAPGTGVIAGRGVRPVLEMAGIKDVLSKRYGSNNPINVVKATFKALSALTSLEEQARMRGMT 162          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_PSEAE1.450e-1237.0430S ribosomal protein S5 OS=Pseudomonas aeruginosa... [more]
RS5_PSEAB1.450e-1237.0430S ribosomal protein S5 OS=Pseudomonas aeruginosa... [more]
RS5_PSEA81.450e-1237.0430S ribosomal protein S5 OS=Pseudomonas aeruginosa... [more]
RS5_PSEA71.450e-1237.0430S ribosomal protein S5 OS=Pseudomonas aeruginosa... [more]
RS5_CHRVO1.450e-1233.9630S ribosomal protein S5 OS=Chromobacterium violac... [more]
RS5_ALHEH1.450e-1234.9130S ribosomal protein S5 OS=Alkalilimnicola ehrlic... [more]
RS5_VIBCM1.893e-1238.6830S ribosomal protein S5 OS=Vibrio cholerae seroty... [more]
RS5_VIBCH1.893e-1238.6830S ribosomal protein S5 OS=Vibrio cholerae GN=rps... [more]
RS5_VIBC31.893e-1238.6830S ribosomal protein S5 OS=Vibrio cholerae seroty... [more]
RS5_ROSS11.893e-1241.9030S ribosomal protein S5 OS=Roseiflexus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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