CN185587

Overview
NameCN185587
Unique NameCN185587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_ACIBL (30S ribosomal protein S5 OS=Acidobacteria bacterium (strain Ellin345) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A++K  E   +NL  V   +  +I H +   Y   +V L PAP  TG+ AG  V+ ++  AG +NV +K +G+ NPHN +KA F+AL  +   ++V    G+TV E
Sbjct:   62 PQAIRKGIESAKKNLVKVNLSQT-SIPHQVLGRYGSGRVMLKPAPEGTGVIAGGAVRAVMTSAGVQNVLTKSIGTTNPHNVIKATFEALKQLRDRREVAAGRGKTVEE 168          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEFN (30S ribosomal protein S5 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSKVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPAQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHEDO (30S ribosomal protein S5 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  +KVY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSKVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPAQIAAKRGLNVDE 164          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_PSYWF (30S ribosomal protein S5 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E   +N+  V+  +  T+ H I   +  +KVY+ PA   TG+ AG  V+ +L  AG +NV +K  GS NP N V+A F  L  + +P+    K G++V E
Sbjct:   56 PAAIQKALEAAKRNMITVDL-DGATLQHPIIARHGASKVYMQPANEGTGVIAGGAVRAVLESAGVENVLTKCYGSTNPTNVVRATFNGLRDMSSPEKAAAKRGKSVDE 162          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_GEOSL (30S ribosomal protein S5 OS=Geobacter sulfurreducens GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRT 319
            P A++K  E+  +NL  V   E HTI + +   +   +V + PA   TG+ AG   + +   AG  NV SK +GS NPHN VKA F  L  + +P+++  + G T
Sbjct:   57 PEAIRKGVEQAKKNLIKVPIVEGHTIPYEVLGHFGAGRVLIKPASAGTGVIAGGAARAVFEAAGLHNVLSKCLGSNNPHNVVKAAFNGLAQLRSPEEIMARRGVT 161          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLP8 (30S ribosomal protein S5 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2
Query:   77 TIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVEKY 334
            TI H I   Y   KV + PA   TG+ AG  V+ +L +AG  ++ +K +GS NPHN VKA  K L +I    DV E+  +T+ E Y
Sbjct:   85 TIPHPIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLQSISDANDVAERRSKTLQEVY 170          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_CHLCV (30S ribosomal protein S5 OS=Chlamydophila caviae GN=rpsE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 2
Query:   11 ALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEK 307
            A++K  E   +NL  +E  E  +I H +       ++ L PA + TG+ AG  ++ IL +AG KN+ +K +GS NP N VKA FKAL ++ + KDV ++
Sbjct:   61 AIRKGGEAARKNLITIESLESGSIPHEVLVDQDGAQLLLKPAKSGTGIVAGSRIRLILEMAGVKNIVAKSLGSNNPMNQVKAAFKALLSLSSRKDVLQR 159          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_TOLAT (30S ribosomal protein S5 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA E+  +N+  VE  E  T+ H ++ ++  + V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A  +AL  I++P+ V  K G  V E
Sbjct:   57 PAAIQKAMEQARRNMVKVELIEG-TLHHHVKGTHAGSTVFMQPASQGTGIIAGGAMRAVLEVAGVHNVLAKTYGSTNPMNVVRATIEALADIKSPEQVAAKRGLRVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SODGM (30S ribosomal protein S5 OS=Sodalis glossinidius (strain morsitans) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  V  +   T+ H I+  +  ++V++ PA   TG+ AG  ++ +L +AG  NV +K  GS NP N V+A   AL  +++P+ V  K G++V E
Sbjct:   57 PAAIQKAMEKARRNMMNVALNSG-TLQHPIKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDALGNMKSPEMVAAKRGKSVEE 163          
BLAST of CN185587 vs. ExPASy Swiss-Prot
Match: RS5_SHESW (30S ribosomal protein S5 OS=Shewanella sp. (strain W3-18-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    5 PIALQKAYEKCSQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRTVQTILHLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDVEEKFGRTVVE 328
            P A+QKA EK  +N+  VE +   T+ H ++  +  ++VY+ PA   TG+ AG  ++ +L +AG  NV SK  GS NP N V+A   AL  +++P  +  K G  V E
Sbjct:   58 PAAIQKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGLNVDE 164          
The following BLAST results are available for this feature:
BLAST of CN185587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
RS5_ACIBL1.893e-1237.0430S ribosomal protein S5 OS=Acidobacteria bacteriu... [more]
RS5_SHEFN2.472e-1238.8930S ribosomal protein S5 OS=Shewanella frigidimari... [more]
RS5_SHEDO2.472e-1238.8930S ribosomal protein S5 OS=Shewanella denitrifica... [more]
RS5_PSYWF2.472e-1237.9630S ribosomal protein S5 OS=Psychrobacter sp. (str... [more]
RS5_GEOSL2.472e-1236.1930S ribosomal protein S5 OS=Geobacter sulfurreduce... [more]
RS5_CHLP83.229e-1241.8630S ribosomal protein S5 OS=Chlorobaculum parvum (... [more]
RS5_CHLCV3.229e-1238.3830S ribosomal protein S5 OS=Chlamydophila caviae G... [more]
RS5_TOLAT4.217e-1237.9630S ribosomal protein S5 OS=Tolumonas auensis (str... [more]
RS5_SODGM4.217e-1237.0430S ribosomal protein S5 OS=Sodalis glossinidius (... [more]
RS5_SHESW4.217e-1237.9630S ribosomal protein S5 OS=Shewanella sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185587 ID=CN185587; Name=CN185587; organism=Citrus sinensis; type=EST; length=681bp
TTGCCCTATTGCTCTTCAGAAGGCGTATGAGAAATGCTCTCAGAATCTTC
ACTACGTGGAACGACACGAGGAGCATACGATTGCACATGCAATACAAACA
TCATACAAGAAAACTAAGGTGTATTTATGGCCTGCACCAACTGCAACGGG
TATGAAAGCTGGGAGAACTGTCCAGACAATTTTGCATTTAGCTGGTTTCA
AAAATGTCAAATCTAAGGTTGTCGGCTCAAGGAATCCTCATAACACTGTT
AAGGCTCTTTTCAAAGCTCTCAATGCAATCGAAACTCCAAAGGATGTTGA
AGAGAAGTTTGGCCGGACCGTTGTGGAGAAATACCTACTATGATTGCTGT
GCATTACAGGTTTCTGTGTGTAATTTCTAGTTGTATTTTCTTTTGAATAT
TCATTTACAAATTAGCGAGGAAATGAAATTTTTTGACTGTATGCTTTCCT
GGTAGCCATTTTTGCTACTTTATCTCATTCTAATTTGGTTCGGTGGGCAA
TTTGATCACAAAGATCAGATTAAACGAAGCACAGAATAATGGGGCTTCTT
AAGAGTGAATATAGTTTCTTCTTGAATAATGCAAGTTGACTCTAGTTTCA
AGTTATTTACCAGGACAGTCCTATTTGTAAGCCTTTATTGTAAAGGAGAA
TTTTCCTAGCTGCCTAAAAAAAAAAAAAAAA
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