CN185579

Overview
NameCN185579
Unique NameCN185579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 52/175 (29.71%), Postives = 91/175 (52.00%), Query Frame = 3
Query:   81 SQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIPKASSTAKIVDINVQ*D 602
            S P+ R   +    ++D F   R++ Q++  ++ + ++P             + +  RRG   W  RETE+   +R D+PG+ + DVK+ VE++ L IK E         +G+   EE+E        +++RI LP+ + + + IKAE+K+GVL +T+PK     +   INV+ D
Sbjct:   55 SFPRTRRDDLLLSDVFDPFSPPRSLSQVLNMVDLLTDNPV------------LSAASRRG---WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGE---------EGAKESEEKE---KSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  123 IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIPK 557
            I D F   R++ QM+  M+++ E P        + +    SG RRG   W ++E ++   +R D+PG++R DVK+ +E++ LVI+ E          G T  EE E  +     + +RI LP+ + + ++IKAE+K+GVL + IPK
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV-----SATRGMGASGVRRG---WNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGE----------GET--EEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPK 195          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  276 IRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNIEFEKIKAEVKDGVLYITIPKASSTAKIV 581
            +RE E  Y++RF+VPG+ ++DV+V V++ +L I  EK  R+    D    G+ E W      +Y+  + LP++   E I AEV+DGVL++T+P++    + V
Sbjct:  117 VREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEK--RDVVEEDRGRDGDGECWAA---ATYHAGLLLPEDAVAEGITAEVRDGVLHVTVPRSPERKRSV 213          
BLAST of CN185579 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 46/134 (34.33%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  204 YGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRFDVPGMNRNDVKVRVEESMLVIKAEKAQRNEASTDGSTVGEEEEWPTNGYGSYNTRIALPDNI-EFEKIKAEVKDGVLYITIPKASSTAK--IVDINVQ 596
            +G + P +  R RS    GR  W  RETE+   +R D+PG+ + DVK+ VE++ L+IK E          G+  G+EEE        Y +RI LPD + + ++I+AE+K+GVL + +PK     +  ++ + V+
Sbjct:   93 HGQSVPLRVARDRSWRWSGRG-WDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGE----------GAKEGDEEE----SARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          
The following BLAST results are available for this feature:
BLAST of CN185579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS22M_PEA2.542e-1329.71Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS235_ARATH7.397e-1333.5623.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ORYSJ2.811e-1236.2723.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS22M_SOYBN4.794e-1234.33Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185579 ID=CN185579; Name=CN185579; organism=Citrus sinensis; type=EST; length=733bp
GAGGCTTTTGTGGCAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTT
GATCACTTGCAAAGATCGTCGCTGAATCAATCCCAGCCAAAAAAGAGAGC
CGCCCCAGTTTCATCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGA
CGGTGCAACAGATGATGGAAACCATGGAAAGAATAATGGAGGATCCTTTT
GCTTACGGAGTCACTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATA
CAGACGGGGAAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACA
AGATTAGGTTCGACGTGCCTGGCATGAACAGGAATGATGTTAAGGTAAGG
GTTGAAGAGAGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGA
AGCAAGCACTGATGGAAGTACAGTTGGGGAAGAAGAAGAGTGGCCAACCA
ATGGTTACGGAAGCTACAACACTAGAATTGCATTGCCTGACAACATAGAG
TTTGAGAAGATTAAAGCAGAGGTGAAAGATGGCGTACTGTATATAACCAT
TCCAAAGGCCAGCTCCACTGCCAAAATCGTCGACATTAATGTCCAATAGG
ACAAGTATTCTGGTAACCTCAAGTTCCACATAGGACAAACCTAGATCCTC
TAAGCTCTGCCTAGAGGAAGGTGGTGGGTAGAAAATAAGTGGCAGTAGGG
TTAATTTGATTTCTTCATGGAATTTCAAACAGG
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