CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSSRAGLQFPVGR+HR LK     + RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKKGNYGN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1E_RAT (Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   94 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            MSG+G  G   G               SRSSRAGLQFPVGRIHRLL+    A  R+GA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKAKGKSK------------SRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   94 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            MSG+G  G   G               SRSSRAGLQFPVGRIHRLL+    A  R+GA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKAKGKSK------------SRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELAGN ++D K  RI
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRI 79          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A2_PSAMI2.021e-1670.31Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A1_XENLA2.021e-1670.31Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A1_HUMAN2.021e-1670.31Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE... [more]
H2A1_BOVIN2.021e-1670.31Histone H2A type 1 OS=Bos taurus PE=1 SV=2[more]
H2A1J_HUMAN2.021e-1670.31Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ ... [more]
H2A1H_HUMAN2.021e-1670.31Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH ... [more]
H2A1E_RAT2.021e-1670.31Histone H2A type 1-E OS=Rattus norvegicus PE=1 SV=... [more]
H2A_URECA2.639e-1656.04Histone H2A OS=Urechis caupo PE=3 SV=2[more]
H2A_SIPNU2.639e-1656.04Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A3_CHICK3.447e-1670.31Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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