CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   94 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            MSG+G  G   G               +RSSRAGLQFPVGRIHRLL+    A  RVGA A VY AA++EYL AEVLELAGNA++D K  RI
Sbjct:    1 MSGRGKGGKAKGKSK------------TRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_MOUSE (Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1K_MOUSE (Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1H_MOUSE (Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1F_MOUSE (Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1D_HUMAN (Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1B_HUMAN (Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2AB PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.501e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSSRAGLQFPVGR+HR L+    A  RVG  A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAK-RVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_CRYNE (Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRIHRLLK    A  R+G+ A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSSKAGLQFPVGRIHRLLKKGNYAQ-RIGSGAPVYLAAVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.879e-16
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSSRAGLQFPVGR+HR+L+    A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_PLADU4.501e-1656.04Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A1_MOUSE4.501e-1668.75Histone H2A type 1 OS=Mus musculus GN=Hist1h2ab PE... [more]
H2A1K_MOUSE4.501e-1668.75Histone H2A type 1-K OS=Mus musculus GN=Hist1h2ak ... [more]
H2A1H_MOUSE4.501e-1668.75Histone H2A type 1-H OS=Mus musculus GN=Hist1h2ah ... [more]
H2A1F_MOUSE4.501e-1668.75Histone H2A type 1-F OS=Mus musculus GN=Hist1h2af ... [more]
H2A1D_HUMAN4.501e-1668.75Histone H2A type 1-D OS=Homo sapiens GN=HIST1H2AD ... [more]
H2A1B_HUMAN4.501e-1668.75Histone H2A type 1-B/E OS=Homo sapiens GN=HIST1H2A... [more]
H2A_PARLI5.879e-1668.75Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_CRYNE5.879e-1668.75Histone H2A OS=Cryptococcus neoformans GN=HTA1 PE=... [more]
H2A_CAEEL5.879e-1670.31Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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