CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS RAGLQFPVGR+HRLL+    A  R+GA   VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSFRAGLQFPVGRVHRLLRQGNYAE-RIGAGTPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS+RAGLQFPVGR+HR L+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSARAGLQFPVGRVHRFLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  178 RSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            RSSRAGLQFPVGR+HR L+    A+ RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:    9 RSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 70          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    +  RVGA A VY AA+LEYLTAE+LELA NA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ISRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   17 ISRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PHANO (Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A4_RAT1.711e-1567.19Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2AL_STRPU2.234e-1567.19Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2A3_STRPU2.234e-1568.25Histone H2A-beta, sperm (Fragment) OS=Strongylocen... [more]
H2A1F_RAT2.234e-1567.19Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=... [more]
H2A7_WHEAT2.918e-1570.77Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A_PODAN3.811e-1567.19Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A_PHANO3.811e-1567.19Histone H2A OS=Phaeosphaeria nodorum GN=HTA1 PE=3 ... [more]
H2A_NEUCR3.811e-1567.19Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_NEOFI3.811e-1567.19Histone H2A OS=Neosartorya fischeri (strain ATCC 1... [more]
H2A_MAGGR3.811e-1567.19Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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