CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS++AGLQFPVGRI R LK    A  R+GA A VY AA+LEYLTAEVLELAGNA++D K  RI
Sbjct:   15 VSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_BOTFB (Histone H2A OS=Botryotinia fuckeliana (strain B05.10) GN=hta1 PE=3 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   19 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 81          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPTN (Histone H2A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hta1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_GIBZE3.811e-1567.19Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_EMENI3.811e-1567.19Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV... [more]
H2A_COCIM3.811e-1567.19Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2A_CHLRE3.811e-1567.69Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A_CHAGB3.811e-1567.19Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A_BOTFB3.811e-1567.19Histone H2A OS=Botryotinia fuckeliana (strain B05.... [more]
H2A_ASPTN3.811e-1567.19Histone H2A OS=Aspergillus terreus (strain NIH 262... [more]
H2A_ASPOR3.811e-1567.19Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=... [more]
H2A_ASPNG3.811e-1567.19Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC3.811e-1567.19Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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