CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LKS   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   23 VSRSSKAGLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRI 86          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS++AGLQFPVGRI R LK    A  R+GA A VY AA+LEYLTAEVLELAGNA++D K  RI
Sbjct:   15 VSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGL FPVGR+HR L++   A  R+G++A VY A++LEYLTAE+LELAGNA++D K  RI
Sbjct:   20 SRSSKAGLTFPVGRVHRFLRNGNYAQ-RIGSSAPVYLASVLEYLTAEILELAGNAARDNKKSRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS +AGLQFPVGRI R LK    A  RVG+ A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   23 PVSRSVKAGLQFPVGRIGRFLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 87          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 50/91 (54.95%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   94 MSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            MS  GAKG                  +SRS +AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:    1 MSSSGAKG--------GRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_LYTPI (Histone H2A, sperm (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSSRAGLQFPVGR+HR L+    A  RVGA A VY AA+ EYL AE+LELAGNA+ D K  RI
Sbjct:    3 SRSSRAGLQFPVGRVHRFLRKGNYAQ-RVGAGAPVYLAAVFEYLAAEILELAGNAAPDNKKTRI 65          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   17 MSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   17 MSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_ASPFU3.811e-1567.19Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL3.811e-1567.19Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2AXA_ARATH3.811e-1569.23Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2A3_VOLCA3.811e-1567.69Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A2_LODEL4.977e-1562.50Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2... [more]
H2A_EUPES6.500e-1566.67Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2AX_PICAB6.500e-1554.95Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2A3_LYTPI6.500e-1567.19Histone H2A, sperm (Fragment) OS=Lytechinus pictus... [more]
H2A2_ORYSJ6.500e-1569.23Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI6.500e-1569.23Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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