CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   20 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRI 83          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   23 VSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRI 86          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRSS+AGLQFPVGRI R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++D K  RI
Sbjct:   19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AX_CICAR8.489e-1567.69Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ORYSJ8.489e-1567.69Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI8.489e-1567.69Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXB_ARATH8.489e-1567.69Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ORYSJ8.489e-1567.69Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI8.489e-1567.69Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A7_ORYSJ8.489e-1570.31Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI8.489e-1570.31Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A6_ARATH8.489e-1570.31Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A4_WHEAT8.489e-1570.31Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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