CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_SCHPO (Histone H2A-beta OS=Schizosaccharomyces pombe GN=hta2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_SCHPO (Histone H2A-alpha OS=Schizosaccharomyces pombe GN=hta1 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.489e-15
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS +AGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 89          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS +AGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   25 PVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 89          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAGLQFPVGRI R LK+   +  R+G  A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 83          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A3_ORYSJ8.489e-1570.31Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI8.489e-1570.31Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A3_ARATH8.489e-1570.31Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A2_SCHPO8.489e-1565.63Histone H2A-beta OS=Schizosaccharomyces pombe GN=h... [more]
H2A1_SCHPO8.489e-1565.63Histone H2A-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2A1_ORYSJ8.489e-1570.31Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]
H2A1_ORYSI8.489e-1570.31Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A6_ORYSJ1.109e-1466.67Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI1.109e-1466.67Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A1_TETTH1.109e-1466.15Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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