CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAGLQFPVGRI R LK+   +  R+G  A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   20 VSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 83          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAGLQFPVGRI R LK    +  RVG  A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSE-RVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 83          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+AGLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKAGLQFPVGRIARFLKNGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAGLQFPVGRI R LK    +  R+G  A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   20 VSRSARAGLQFPVGRISRFLKHGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 83          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGRIHRLL+    A  RVG+ A VY  ++LEYLTAE+LELAGNA++D K  RI
Sbjct:   16 SRSAKAGLTFPVGRIHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRI 78          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGRIHRLL+    A  RVG+ A VY  ++LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRIHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRSS+ GLQFPVGRI R LK+   A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 SRSSKGGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSS+AGLQFPVGRI R LK    A  RVGA A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   18 TRSSKAGLQFPVGRIARFLKKGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS +AGLQFPVGRI R LK    +  R+G  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 90          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS +AGLQFPVGRI R LK    +  R+G  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   26 PVSRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 90          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A1_TETPY1.109e-1466.15Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2AX_TETTH1.448e-1467.69Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2A2_ARATH1.448e-1470.31Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2AX_TETPY1.891e-1466.15Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A2_PICGU1.891e-1464.06Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A1_PICGU1.891e-1464.06Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=... [more]
H2A8_ORYSI2.470e-1468.75Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]
H2A1_ARATH2.470e-1468.75Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A4_ORYSJ3.226e-1463.64Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI3.226e-1463.64Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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