CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS+RAGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   23 VTRSTRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 86          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.213e-14
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   97 SGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +G GA G +                +SRS +AGLQFPVGRI R LK    A  R+G  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:    4 AGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 92          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.213e-14
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   97 SGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +G GA G +                +SRS +AGLQFPVGRI R LK    A  R+G  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:    4 AGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 92          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS +AGLQFPVGRI R LK    A  RVG+ A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   22 VTRSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRI 85          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS RAGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   24 VTRSVRAGLQFPVGRIGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 87          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.503e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYMTAVLEYLAAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS +AGLQFPVGRI R LK    A  RVG+ A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 76          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  169 PISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            P+SRS ++GLQFPVGRI R LK    +  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   24 PVSRSVKSGLQFPVGRIGRYLKKGRYSK-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 88          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS RAGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   25 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 88          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A1_MEDTR3.226e-1466.15Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A5_ORYSJ4.213e-1451.11Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI4.213e-1451.11Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A3_WHEAT5.503e-1466.15Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A2_PEA5.503e-1466.15Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A1_ASHGO5.503e-1460.94Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3[more]
H2A_KLULA7.187e-1460.94Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A5_WHEAT7.187e-1466.15Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A4_ARATH7.187e-1463.64Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A3_MEDTR7.187e-1466.15Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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