CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS RAGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   24 VTRSIRAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 87          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS +AGLQFPVGRI R LK    A  RVG+ A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 76          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS RAGLQFPVGR+ R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   24 VTRSVRAGLQFPVGRVGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 87          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVG+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVG+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_YEAST (Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_PICST (Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVG+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_DEBHA (Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.386e-14
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  RVG+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A2_MEDTR7.187e-1466.15Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A2_ASHGO7.187e-1460.94Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A1_WHEAT7.187e-1466.15Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A1_PEA7.187e-1464.62Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A2_YEAST9.386e-1460.94Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]
H2A2_PICST9.386e-1460.94Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A2_DEBHA9.386e-1460.94Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=... [more]
H2A1_YEAST9.386e-1460.94Histone H2A.1 OS=Saccharomyces cerevisiae GN=HTA1 ... [more]
H2A1_PICST9.386e-1460.94Histone H2A.1 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]
H2A1_DEBHA9.386e-1460.94Histone H2A.1 OS=Debaryomyces hansenii GN=HTA1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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