CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_LODEL (Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_CANAL (Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.226e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AGL FPVGR+HRLL+    A  R+G+ A VY  ++LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A8_ARATH (Putative histone H2A.8 OS=Arabidopsis thaliana GN=At4g13570 PE=5 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 38/58 (65.52%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  193 GLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            G  F V RIH+ LK+R +AH  VGAT  VY  +ILEYLT EVL+LA N SKDLKVKRI
Sbjct:   28 GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRI 85          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +S+S +AGLQFPVGRI R LK    A  R+G  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   25 VSKSMKAGLQFPVGRITRFLKKGRYAQ-RLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRI 88          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +++S +AGLQFPVGRI R LK    A  RVG+ A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 85          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RS++AGL FPVGR+HRLL+    A  R+G+ A VY  A+LEYL AE+LELAGNA++D K  RI
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRI 80          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFPVGRI R LK    A  RVGA A VY AA+LEYL AE+LELAGNA++D K  RI
Sbjct:   17 SNSAKAGLQFPVGRIGRYLKKGKYAK-RVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRI 79          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS +AGLQFPVGRI R LK    A  RVG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   23 VTRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 86          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A2_CANAL1.226e-1359.38Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]
H2A1_LODEL1.226e-1359.38Histone H2A.1 OS=Lodderomyces elongisporus GN=HTA1... [more]
H2A1_CANAL1.226e-1359.38Histone H2A.1 OS=Candida albicans GN=HTA1 PE=3 SV=... [more]
H2A8_ARATH1.601e-1365.52Putative histone H2A.8 OS=Arabidopsis thaliana GN=... [more]
H2A7_ARATH1.601e-1363.08Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A2_WHEAT1.601e-1364.62Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]
H2A2_CANGA1.601e-1359.38Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_CANGA1.601e-1359.38Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A_PLAFA2.091e-1365.63Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_PETCR2.091e-1364.62Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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