CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 49/94 (52.13%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   85 AGKMSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            AG    KGA G  +G              +SRS +AGLQFPVGRI R LK    A   VG  A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:    8 AGGKGKKGAAGRKVGGPRKKS--------VSRSVKAGLQFPVGRIGRYLKKGRYAQX-VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 92          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            ++RS +AGLQFPVGRI R LK    A   VG+ A VY AA+LEYL AEVLELAGNA+KD K  RI
Sbjct:   13 VTRSVKAGLQFPVGRIGRYLKKGRYAQA-VGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 76          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +++S +AGLQFPVGRI R LK    A  RVG+ A +Y AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   22 VTKSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRI 85          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.658e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++A L FPVGR+HRLL+    A  R+GA A +Y AA+LEYL  E+LEL+GNA++D K  RI
Sbjct:   20 SRSAKADLTFPVGRVHRLLRKGNYAQ-RIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRI 82          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +S+S +AGLQFPVGRI R LK    A  R G+ A VY AA+LEYL AEVLELAGNA++D K  RI
Sbjct:   26 VSKSVKAGLQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 89          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELA 330
            +RSSRAGLQFPVGR+HRLL+    A  RVGA A VY AA+LEYLTAE+LELA
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELA 67          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AW_MOUSE (Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.943e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAG+ FPVGR+ R LK  T  + R+   A VY AA++EYL AE+LELAGNA++D K  RI
Sbjct:   13 LSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARI 76          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AW_HUMAN (Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.943e-12
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +SRS+RAG+ FPVGR+ R LK  T  + R+   A VY AA++EYL AE+LELAGNA++D K  RI
Sbjct:   13 LSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARI 76          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  178 RSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +S +AGL FPVGR   LL++   A  RVG  A VY AA+LEYL+AE+LELAGNAS+D K KRI
Sbjct:   32 QSKKAGLTFPVGRTGSLLRAGRYAK-RVGKGAPVYLAAVLEYLSAELLELAGNASRDNKKKRI 93          
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            SRS++AG+ FPVGR+ R +K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+
Sbjct:   14 SRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRV 76          
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A_MAIZE2.731e-1352.13Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A6_WHEAT2.731e-1364.62Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A1_SOLLC3.567e-1361.54Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_YARLI4.658e-1357.81Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV... [more]
H2A5_ARATH1.038e-1263.08Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A2_XENLA1.355e-1273.08Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3[more]
H2AW_MOUSE3.943e-1256.92Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2... [more]
H2AW_HUMAN3.943e-1256.92Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2... [more]
H2A_EUGGR1.147e-1161.90Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2AY_RAT1.147e-1156.25Core histone macro-H2A.1 OS=Rattus norvegicus GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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