CN185551
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13 Identity = 49/94 (52.13%), Postives = 55/94 (58.51%), Query Frame = 1 Query: 85 AGKMSGKGAKGLIMGXXXXXXXXXXXXXPISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 AG KGA G +G +SRS +AGLQFPVGRI R LK A VG A VY AA+LEYL AEVLELAGNA++D K RI Sbjct: 8 AGGKGKKGAAGRKVGGPRKKS--------VSRSVKAGLQFPVGRIGRYLKKGRYAQX-VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 92
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13 Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 ++RS +AGLQFPVGRI R LK A VG+ A VY AA+LEYL AEVLELAGNA+KD K RI Sbjct: 13 VTRSVKAGLQFPVGRIGRYLKKGRYAQA-VGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRI 76
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13 Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 +++S +AGLQFPVGRI R LK A RVG+ A +Y AA+LEYL AEVLELAGNA++D K RI Sbjct: 22 VTKSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRI 85
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_YARLI (Histone H2A OS=Yarrowia lipolytica GN=HTA1 PE=3 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 4.658e-13 Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 SRS++A L FPVGR+HRLL+ A R+GA A +Y AA+LEYL E+LEL+GNA++D K RI Sbjct: 20 SRSAKADLTFPVGRVHRLLRKGNYAQ-RIGAGAPIYLAAVLEYLAVEILELSGNAARDNKKSRI 82
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12 Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 +S+S +AGLQFPVGRI R LK A R G+ A VY AA+LEYL AEVLELAGNA++D K RI Sbjct: 26 VSKSVKAGLQFPVGRIARYLKKGRYAL-RYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRI 89
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12 Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 Query: 175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELA 330 +RSSRAGLQFPVGR+HRLL+ A RVGA A VY AA+LEYLTAE+LELA Sbjct: 17 TRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELA 67
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AW_MOUSE (Core histone macro-H2A.2 OS=Mus musculus GN=H2afy2 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 3.943e-12 Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 +SRS+RAG+ FPVGR+ R LK T + R+ A VY AA++EYL AE+LELAGNA++D K RI Sbjct: 13 LSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARI 76
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AW_HUMAN (Core histone macro-H2A.2 OS=Homo sapiens GN=H2AFY2 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 3.943e-12 Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 172 ISRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 +SRS+RAG+ FPVGR+ R LK T + R+ A VY AA++EYL AE+LELAGNA++D K RI Sbjct: 13 LSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARI 76
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11 Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 Query: 178 RSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 +S +AGL FPVGR LL++ A RVG A VY AA+LEYL+AE+LELAGNAS+D K KRI Sbjct: 32 QSKKAGLTFPVGRTGSLLRAGRYAK-RVGKGAPVYLAAVLEYLSAELLELAGNASRDNKKKRI 93
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AY_RAT (Core histone macro-H2A.1 OS=Rattus norvegicus GN=H2afy PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11 Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366 SRS++AG+ FPVGR+ R +K + R+G A VY AA+LEYLTAE+LELAGNA++D K R+ Sbjct: 14 SRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRV 76 The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 233
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bpback to top |