CN185551

Overview
NameCN185551
Unique NameCN185551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.809e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GRI R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 87
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPOR (Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPNC (Histone H2A.Z OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPFU (Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPCL (Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.281e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S++AGLQFP GR+ R LK+ T    RVGA AAVY  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRI 88
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            S S+RAGLQFPVGR+ R LK +     RVG+ AA+Y  A+LEYLTAEVLELAGNA+KDLKVKRI
Sbjct:   23 SHSARAGLQFPVGRVKRYLKKQAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 86
[Close]
BLAST of CN185551 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  175 SRSSRAGLQFPVGRIHRLLKSRTTAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 366
            +RSSRAGLQFPVGR+HRLL+    AH RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 79
The following BLAST results are available for this feature:
BLAST of CN185551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2AZ_COCIM4.809e-1873.44Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3... [more]
H2AZ_NEOFI6.281e-1871.88Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]
H2AZ_MONAN6.281e-1871.88Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1[more]
H2AZ_EMENI6.281e-1871.88Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ... [more]
H2AZ_ASPOR6.281e-1871.88Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 S... [more]
H2AZ_ASPNC6.281e-1871.88Histone H2A.Z OS=Aspergillus niger (strain CBS 513... [more]
H2AZ_ASPFU6.281e-1871.88Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=... [more]
H2AZ_ASPCL6.281e-1871.88Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3... [more]
H2AZ_LODEL1.399e-1770.31Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AX_XENLA1.828e-1771.88Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185551 ID=CN185551; Name=CN185551; organism=Citrus sinensis; type=EST; length=366bp
GAGGGTTCTTTGGCTTTGAAACCTCACCCGTCTTTCTTCATCTTTGCGGA
ATCTGTCTCTGTCTCGAAATCTGTTAAATTATTGGCGGGAAAGATGTCGG
GAAAAGGCGCGAAAGGTTTGATCATGGGAAAGGCCTCGGCTAGTAACAAG
GACAAGGACAAGAAGAAACCCATTTCCCGCTCTTCCCGTGCTGGCCTTCA
GTTCCCGGTTGGTCGGATTCACCGTCTTTTGAAGTCAAGAACCACAGCAC
ATGGAAGAGTAGGAGCGACTGCTGCTGTGTACTCTGCTGCCATCTTGGAA
TATTTGACTGCAGAGGTGTTGGAGCTGGCTGGAAATGCAAGCAAAGATCT
TAAGGTGAAGCGTATA
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