CN185501

Overview
NameCN185501
Unique NameCN185501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_MOUSE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.088e-62
Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+D +LTFRRS  EGICGSCAMNI+G N LAC  +I    S  S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRD++T+ERL  + D F +YRCHTI+NC + CP+
Sbjct:   81 IKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVYRCHTIMNCTQTCPK 257          

HSP 2 Score: 27.7202 bits (60), Expect = 3.088e-62
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  256 PKGLNPGKAIAEIKKM 271          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_PIG (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 6.847e-62
Identity = 108/177 (61.02%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNI+G N LAC  +I  +    S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+      ++  QS ++R KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRD++T+ERL  + D F LYRCHTI+NC   CP+
Sbjct:   79 IKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPK 255          

HSP 2 Score: 27.7202 bits (60), Expect = 6.847e-62
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  254 PKGLNPGKAIAEIKKM 269          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CANGA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata GN=SDH2 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 8.938e-62
Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E D +LTFRRS  EGICGSCAMNI G N LACL KI    S +T I PLPHMF++KDLV D+T  Y QYKSI+P+L+R + P   GKE+ QS  DR KLDG+YECILCACCSTSCPSYWW  E YLGPA L+ A  W+ DSRD+ TK R   + +   LYRCHTI+NC R CP+
Sbjct:   60 IKNEQDATLTFRRSCREGICGSCAMNIGGANTLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQRTDYPA-DGKEVLQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWLIDSRDQATKARRTMLQNSMSLYRCHTIMNCTRTCPK 235          

HSP 2 Score: 26.1794 bits (56), Expect = 8.938e-62
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PKGLNPG+ I  IK+
Sbjct:  234 PKGLNPGRSIAEIKK 248          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_USTMA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ustilago maydis GN=SDH2 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.978e-61
Identity = 106/176 (60.23%), Postives = 135/176 (76.70%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EIDP+LTFRRS  EGICGSCAMNIDG N LACL +I        I PLPHM+++KDLV D+T  Y QY+SIEP+LK  N P   G+ + QS ++R +LDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W++DSRD++ +ER + +++ F LYRCHTI+NC+R CP+
Sbjct:   92 IKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIDKQNDTK-IYPLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNNTPS-EGEHL-QSPEERRRLDGLYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDDFGEERRQKLENTFSLYRCHTIMNCSRTCPK 264          

HSP 2 Score: 24.6386 bits (52), Expect = 1.978e-61
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PK LNPGK I  IK+
Sbjct:  263 PKNLNPGKAIAQIKK 277          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_PARDE (Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus denitrificans GN=sdhB PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.981e-61
Identity = 108/176 (61.36%), Postives = 132/176 (75.00%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EIDP+LTFRRS  EGICGSCAMNIDG N LAC+  +        I PLPHM V+KDLV D+T+ Y Q+ S++P+L  + P P   KE  QS +DR KLDG+YEC++CA CST+CPSYWW  + YLGPAALLHA  WI DSRDE T ERL++++D FKLYRCHTI+NC   CP+
Sbjct:   66 IKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHASVQPYLITETPTP--DKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPK 239          

HSP 2 Score: 27.335 bits (59), Expect = 1.981e-61
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I +IK + + R
Sbjct:  238 PKGLNPAKAIASIKHMMVDR 257          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CAEBR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.113e-61
Identity = 106/177 (59.89%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNI G N LAC+ KI    S ST I PLPHMFV+KDLV DM   Y QY SI+PW+++K P  +  K++ QS  +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A  W+ DSRD+Y +ERL  + D F  ++CHTI+NC + CP+
Sbjct:   77 IKNEVDPTLTFRRSCREGICGSCAMNIGGENTLACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPK 253          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CAEEL (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.760e-61
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNI G N LAC+ KI    S ST I PLPHMFV+KDLV DM   Y QY SI+PW+++K P  +  K++ QS  +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A  W+ DSRD+Y  ERL  + D F  ++CHTI+NC + CP+
Sbjct:   93 IKNEVDPTLTFRRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPK 269          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_YEAST (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 3.667e-60
Identity = 109/177 (61.58%), Postives = 130/177 (73.45%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK E D +LTFRRS  EGICGSCAMNI G N LAC+ KI  + S    I PLPHMF++KDLV D+TN Y QYKSI+P+L+R + P   G E+ QS +DR KLDG+YECILCACCSTSCPSYWW  E YLGPA L+ A  W+ DSRD+ TK R   +++   LYRCHTI+NC R CP+
Sbjct:   73 IKDEQDSTLTFRRSCREGICGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPK-DGTEVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNNSMSLYRCHTIMNCTRTCPK 248          

HSP 2 Score: 24.2534 bits (51), Expect = 3.667e-60
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PKGLNPG  I  IK+
Sbjct:  247 PKGLNPGLAIAEIKK 261          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_DICDI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhB PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.201e-59
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWT---SEAYLGPAALLHAGGWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPR 555
            IK+ IDP+L+FRRS  EGICGSCAMN++G N LAC  KI+   SG    + PLPHM V++DL+ D+++ Y Q+KSI+PWL+   + P   GKEI QSK++R KLDG+YECILCACCSTSCPSYWW+      YLGPA LL A  WI+DSRD   K+RL  + +D+ K+Y+CHTI+NC   CP+
Sbjct:   87 IKNNIDPTLSFRRSCREGICGSCAMNLNGSNTLACTKKITDCLSGDTVKVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVPRYNGKEILQSKENRHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDRLAILSEDQMKVYKCHTIMNCTAVCPK 269          

HSP 2 Score: 30.4166 bits (67), Expect = 5.201e-59
Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I NIK L
Sbjct:  268 PKGLNPGKSIANIKYL 283          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_ASHGO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii GN=SDH2 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.850e-59
Identity = 106/177 (59.89%), Postives = 129/177 (72.88%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E DP+LTFRRS  EGICGSCAMNI G N LACL KI  + +    I PLPHM+V+KDLV D+TN Y QYKSI+P+L++ + P   G+E  QS  DR KLDG+YECILCACCST+CPSYWW +E YLGPA L+ A  W+ DSRD     R E + +   +YRCHTI+NC R CP+
Sbjct:   68 IKNEQDPTLTFRRSCREGICGSCAMNIGGRNTLACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQKASKPA-DGREHLQSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQAYRWMVDSRDGAGAGRREQLQNAMSVYRCHTIMNCTRTCPK 243          

HSP 2 Score: 26.9498 bits (58), Expect = 8.850e-59
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQ 593
            PKGLNPGK I  IK+
Sbjct:  242 PKGLNPGKAIAEIKK 256          
The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
DHSB_MOUSE3.088e-6261.02Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_PIG6.847e-6261.02Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CANGA8.938e-6262.71Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_USTMA1.978e-6160.23Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_PARDE1.981e-6161.36Succinate dehydrogenase iron-sulfur subunit OS=Par... [more]
DHSB_CAEBR2.113e-6159.89Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_CAEEL2.760e-6159.89Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_YEAST3.667e-6061.58Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DICDI5.201e-5957.38Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_ASHGO8.850e-5959.89Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bp
GGGGGCTGGCGGGGCCCCCTCTGATAGATCAAGAGCGAGATCGATCCTTC
CTTGACCTTCCGCCGATCCCGTTGCGAGGGGATTTGCGGCTCGTGCGCGA
TGAACATCGACGGCTGTAACGGACTCGCGTGTCTGACGAAGATTTCGCCG
TCGGGATCAGCATCGACGATAACGCCGTTACCGCACATGTTCGTGATAAA
GGACTTGGTGGTGGATATGACTAATGTTTACAACCAGTACAAAAGTATAG
AGCCGTGGCTGAAGAGGAAGAACCCGCCGCCCATGCCGGGGAAGGAGATT
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTGGGGGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTATCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAGC
TAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTGT
GGATTTGGCCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAATT
TGCACATTGCTTGGATTATTCATCCCATTTGTACTTAGATTGGGATCAAA
TTTGAAGGCTTCTTGTTC
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