CN185501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_MOUSE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 3.088e-62 Identity = 108/177 (61.02%), Postives = 134/177 (75.71%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+D +LTFRRS EGICGSCAMNI+G N LAC +I S S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW + YLGPA L+ A W+ DSRD++T+ERL + D F +YRCHTI+NC + CP+ Sbjct: 81 IKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSVYRCHTIMNCTQTCPK 257 HSP 2 Score: 27.7202 bits (60), Expect = 3.088e-62 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I IK++ Sbjct: 256 PKGLNPGKAIAEIKKM 271
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_PIG (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 6.847e-62 Identity = 108/177 (61.02%), Postives = 133/177 (75.14%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EID +LTFRRS EGICGSCAMNI+G N LAC +I + S I PLPHM+VIKDLV D++N Y QYKSIEP+LK+K+ ++ QS ++R KLDG+YECILCACCSTSCPSYWW + YLGPA L+ A W+ DSRD++T+ERL + D F LYRCHTI+NC CP+ Sbjct: 79 IKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPK 255 HSP 2 Score: 27.7202 bits (60), Expect = 6.847e-62 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I IK++ Sbjct: 254 PKGLNPGKAIAEIKKM 269
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CANGA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata GN=SDH2 PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 8.938e-62 Identity = 111/177 (62.71%), Postives = 130/177 (73.45%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E D +LTFRRS EGICGSCAMNI G N LACL KI S +T I PLPHMF++KDLV D+T Y QYKSI+P+L+R + P GKE+ QS DR KLDG+YECILCACCSTSCPSYWW E YLGPA L+ A W+ DSRD+ TK R + + LYRCHTI+NC R CP+ Sbjct: 60 IKNEQDATLTFRRSCREGICGSCAMNIGGANTLACLCKIDQDESKTTKIYPLPHMFIVKDLVPDLTGFYQQYKSIQPYLQRTDYPA-DGKEVLQSIDDRKKLDGLYECILCACCSTSCPSYWWNQEEYLGPAVLMQAYRWLIDSRDQATKARRTMLQNSMSLYRCHTIMNCTRTCPK 235 HSP 2 Score: 26.1794 bits (56), Expect = 8.938e-62 Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQ 593 PKGLNPG+ I IK+ Sbjct: 234 PKGLNPGRSIAEIKK 248
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_USTMA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ustilago maydis GN=SDH2 PE=3 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 1.978e-61 Identity = 106/176 (60.23%), Postives = 135/176 (76.70%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EIDP+LTFRRS EGICGSCAMNIDG N LACL +I I PLPHM+++KDLV D+T Y QY+SIEP+LK N P G+ + QS ++R +LDG+YECILCACCSTSCPSYWW + YLGPA L+ A W++DSRD++ +ER + +++ F LYRCHTI+NC+R CP+ Sbjct: 92 IKNEIDPTLTFRRSCREGICGSCAMNIDGVNTLACLCRIDKQNDTK-IYPLPHMYIVKDLVPDLTQFYKQYRSIEPFLKSNNTPS-EGEHL-QSPEERRRLDGLYECILCACCSTSCPSYWWNQDEYLGPAVLMQAYRWMADSRDDFGEERRQKLENTFSLYRCHTIMNCSRTCPK 264 HSP 2 Score: 24.6386 bits (52), Expect = 1.978e-61 Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQ 593 PK LNPGK I IK+ Sbjct: 263 PKNLNPGKAIAQIKK 277
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_PARDE (Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus denitrificans GN=sdhB PE=3 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.981e-61 Identity = 108/176 (61.36%), Postives = 132/176 (75.00%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+EIDP+LTFRRS EGICGSCAMNIDG N LAC+ + I PLPHM V+KDLV D+T+ Y Q+ S++P+L + P P KE QS +DR KLDG+YEC++CA CST+CPSYWW + YLGPAALLHA WI DSRDE T ERL++++D FKLYRCHTI+NC CP+ Sbjct: 66 IKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHASVQPYLITETPTP--DKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPK 239 HSP 2 Score: 27.335 bits (59), Expect = 1.981e-61 Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQLQLKR 608 PKGLNP K I +IK + + R Sbjct: 238 PKGLNPAKAIASIKHMMVDR 257
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CAEBR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 2.113e-61 Identity = 106/177 (59.89%), Postives = 133/177 (75.14%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DP+LTFRRS EGICGSCAMNI G N LAC+ KI S ST I PLPHMFV+KDLV DM Y QY SI+PW+++K P + K++ QS +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A W+ DSRD+Y +ERL + D F ++CHTI+NC + CP+ Sbjct: 77 IKNEVDPTLTFRRSCREGICGSCAMNIGGENTLACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPK 253
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CAEEL (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.760e-61 Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E+DP+LTFRRS EGICGSCAMNI G N LAC+ KI S ST I PLPHMFV+KDLV DM Y QY SI+PW+++K P + K++ QS +R +LDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A W+ DSRD+Y ERL + D F ++CHTI+NC + CP+ Sbjct: 93 IKNEVDPTLTFRRSCREGICGSCAMNIGGQNTLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMHDSFSAFKCHTIMNCTKTCPK 269
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_YEAST (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae GN=SDH2 PE=1 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 3.667e-60 Identity = 109/177 (61.58%), Postives = 130/177 (73.45%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK E D +LTFRRS EGICGSCAMNI G N LAC+ KI + S I PLPHMF++KDLV D+TN Y QYKSI+P+L+R + P G E+ QS +DR KLDG+YECILCACCSTSCPSYWW E YLGPA L+ A W+ DSRD+ TK R +++ LYRCHTI+NC R CP+ Sbjct: 73 IKDEQDSTLTFRRSCREGICGSCAMNIGGRNTLACICKIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPK-DGTEVLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNNSMSLYRCHTIMNCTRTCPK 248 HSP 2 Score: 24.2534 bits (51), Expect = 3.667e-60 Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQ 593 PKGLNPG I IK+ Sbjct: 247 PKGLNPGLAIAEIKK 261
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_DICDI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhB PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 5.201e-59 Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWT---SEAYLGPAALLHAGGWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPR 555 IK+ IDP+L+FRRS EGICGSCAMN++G N LAC KI+ SG + PLPHM V++DL+ D+++ Y Q+KSI+PWL+ + P GKEI QSK++R KLDG+YECILCACCSTSCPSYWW+ YLGPA LL A WI+DSRD K+RL + +D+ K+Y+CHTI+NC CP+ Sbjct: 87 IKNNIDPTLSFRRSCREGICGSCAMNLNGSNTLACTKKITDCLSGDTVKVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVPRYNGKEILQSKENRHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDRLAILSEDQMKVYKCHTIMNCTAVCPK 269 HSP 2 Score: 30.4166 bits (67), Expect = 5.201e-59 Identity = 13/16 (81.25%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQL 596 PKGLNPGK I NIK L Sbjct: 268 PKGLNPGKSIANIKYL 283
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_ASHGO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii GN=SDH2 PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 8.850e-59 Identity = 106/177 (59.89%), Postives = 129/177 (72.88%), Query Frame = 1 Query: 28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555 IK+E DP+LTFRRS EGICGSCAMNI G N LACL KI + + I PLPHM+V+KDLV D+TN Y QYKSI+P+L++ + P G+E QS DR KLDG+YECILCACCST+CPSYWW +E YLGPA L+ A W+ DSRD R E + + +YRCHTI+NC R CP+ Sbjct: 68 IKNEQDPTLTFRRSCREGICGSCAMNIGGRNTLACLCKIDQAENKDVKIYPLPHMYVVKDLVPDLTNFYKQYKSIQPYLQKASKPA-DGREHLQSIADRKKLDGLYECILCACCSTACPSYWWNNEQYLGPAVLMQAYRWMVDSRDGAGAGRREQLQNAMSVYRCHTIMNCTRTCPK 243 HSP 2 Score: 26.9498 bits (58), Expect = 8.850e-59 Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 3 Query: 549 PKGLNPGKQIINIKQ 593 PKGLNPGK I IK+ Sbjct: 242 PKGLNPGKAIAEIKK 256 The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bpback to top |