CN185493

Overview
NameCN185493
Unique NameCN185493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEDU (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus ducreyi GN=gnd PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36
Identity = 83/194 (42.78%), Postives = 115/194 (59.28%), Query Frame = -3
Query:  191 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVD--MSGSFHTEW 766
            I  ++ AR +S  K++RV  +++F  +     +   + DKK+ I+ VR+AL ASKI SYAQG  LIR  S    W++  G    +W+ GCIIR+ FL  I+ AY+ NP L  +  DP F   +    + WR+VV  +I  GI    M++++ + D Y  E LPANL+QAQRDYFGAHTYER D      FHT W
Sbjct:  282 ITEAVFARCVSAFKDQRVAVSQLFNKT-----ITPISDDKKEWIEAVRKALLASKIISYAQGFMLIREASENFEWNINYGATALLWREGCIIRSAFLGNIRDAYEANPGLVFLGSDPYFQNILQSAMADWRKVVAKSIEIGIPMPCMAAAITFLDGYSSEHLPANLLQAQRDYFGAHTYERTDKPRCSFFHTNW 470          
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gnd PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.024e-36
Identity = 77/192 (40.10%), Postives = 124/192 (64.58%), Query Frame = -3
Query:  191 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 766
            I  S+ AR+LS LK++R+ A+K+ +   +  + ++   +K+  +++VR+ALY  KI SYAQG + ++  S +  W+L+ G++ +I++ GCIIRA FL+RI  A+  N ++ N+L+ P F++   + + + R +   AI  GI     +S+++Y+D YR     ANL+QAQRDYFGAHTY R D  G FHT W
Sbjct:  280 ITESVFARYLSSLKDQRLIASKILKGPILKCISSQ---NKELFVEEVRRALYLGKIISYAQGFSQLKKASEKYSWNLQYGKIAKIFRAGCIIRADFLERITDAFKSN-NVTNLLLTPYFSEISNKYEKSLRYITSYAIKYGIPVPTFASAISYYDNYRTMSSSANLIQAQRDYFGAHTYRRTDKKGYFHTNW 467          
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_TREPA (6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema pallidum GN=gnd PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.449e-35
Identity = 79/197 (40.10%), Postives = 116/197 (58.88%), Query Frame = -3
Query:  191 IESSLDARFLSGLKEERVEAAKVFRSS---GIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS--FHTEW 766
            I  S+ AR LS  K+ R +A +VF S       + L+ Q   +++L+  +  ALY +KI SYAQG  L+   +  +GW L    +  +W+GGCIIR+ FL +I  A+ +  DL N+++ P FA+E+      WR +V  ++   +    +S++LA+FD +    LPANL+QAQRDYFGAHTYER D      FHT W
Sbjct:  280 ITESVMARSLSAQKQARCKAHRVFGSPVKVSKAETLSAQ--QREELVSALEDALYCAKIVSYAQGFELLSHTAKRRGWTLDFSRIASLWRGGCIIRSGFLSKISAAFAQQHDLENLVLAPFFAEELKRACPGWRTIVAESVRQALPVPALSAALAWFDGFTGAALPANLLQAQRDYFGAHTYERTDAPRGEFFHTNW 474          
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 76/188 (40.43%), Postives = 107/188 (56.91%), Query Frame = -3
Query:  191 ARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS--FHTEW 748
            ARFLS  KE R +AA+ +  + +   + E   D    I DV  ALYASKI SYAQG  L+   S E  W L LGE+  +W+GGCII++ FLD I K +  NP+  +++    F   +   +  WRR V  AI +G+    +++++ ++D YR      +L Q  RDYFGAHTYER D      +HT+W
Sbjct:  285 ARFLSSWKEIREQAARNYPGTPL---IFEMPHDPSVFIQDVFHALYASKIISYAQGFMLLGEASKEYNWGLDLGEIALMWRGGCIIQSAFLDVIHKGFAANPENTSLIFQEYFRGALRHAEMGWRRTVVTAIGAGLPIPCLAAAITFYDGYRTASSSMSLAQGLRDYFGAHTYERNDRPRGEFYHTDW 469          
The following BLAST results are available for this feature:
BLAST of CN185493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_HAEDU2.359e-3642.786-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCAP4.024e-3640.106-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TREPA4.449e-3540.106-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLPN1.212e-3240.436-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185493 ID=CN185493; Name=CN185493; organism=Citrus sinensis; type=EST; length=777bp
AGGATAGAGGGTTATTCGAAAATCAAATGAAAATAAAACTTAAGATTTCC
CTTTTGTCCACGATAATAAAAAGAAAATAATTATAGTTTCCGTCAATGAA
CATTATTGGGTTCAATAATAGTGGTTCATTGAGGCAAGATACAACAACAG
ACGGTTCAAATCAGATCTTTGACTGTTTAGCAATCTTGAACCATTCAGTA
TGGAAGGATCCAGACATGTCAACCCTCTCATAGGTATGAGCTCCAAAGTA
ATCTCTTTGAGCCTGAACCAAATTAGCAGGCAGCCTCTCTCTCCTGTATG
TGTCAAAATAAGCAAGGCTGGAGGACATACCATGAGTACTAATGCCTGAA
TTGATAGCAAGGCAGACAACTCTACGCCAAGCAGATTGTCGTTCTATAAT
CTCCTTTGCAAACTCTGGATCGACAAGAACATTGGCCAGATCTGGGTTTC
TGTCATAGGCCTTCTTAATACGGTCCAAGAATATAGCACGAATAATGCAA
CCCCCCTTCCAAATCCTAGTCAGCTCCCCAAGTTTCAAGTCCCACCCCTT
CTCAATGCTCTTTGCACGTATCAAGTTCATTCCCTGGGCATAGCTGCATA
TTTTGGATGCATAGAGTGCTTGTCTCACGTCATCAATCAACTTTTTCTTA
TCAACAGTTTGCTCAGCTAGGACATCGCCAATGCCACTTGATCTGAAGAC
TTTGGCAGCTTCAACTCTTTCCTCCTTCAAACCACTTAGGAACCTGGCAT
CCAAGGATGATTCTATTGTGGGGGCAG
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