DC887897

Overview
NameDC887897
Unique NameDC887897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SYNFM (60 kDa chaperonin 2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.855e-17
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  227 ETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVE---IKEPEPAMPAGNPMD 559
            E LD + E+  G  IV RAL  P++ IA NAG  GSVV ++V       +G+NA T  YEDL AAG+IDPTKVVR  L++A+SVA   L ++ ++ E    ++P PAMP     D
Sbjct:  427 EKLDLHGEDAFGVKIVMRALEEPVRQIANNAGHEGSVVVQQVKQGTG-SHGFNADTEVYEDLSAAGVIDPTKVVRFALQNAASVASLLLTTEAMIAEKPKKQKPAPAMPGAGMED 540          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH602_SALTO (60 kDa chaperonin 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.855e-17
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = -1
Query:  251 LDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVE-IKEPEPA 553
            LD DE KVG  IV++AL  PL+ IA+NAG +G VV +KV+  D   +G +AATG Y DL  AGI+DP KV R  + +A+S+A   L ++ +VV+  +EPEPA
Sbjct:  430 LDGDE-KVGVSIVRKALVEPLRWIAQNAGHDGYVVVQKVVDKD-WGHGLDAATGEYVDLAKAGILDPVKVTRNAVANAASIAGLLLTTESLVVDKPQEPEPA 529          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.855e-17
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  218 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPA-MPAGNPMDNSG 550
            DN+E+ VG  +  RA+  P++ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SVA   + ++ +V ++ + E A MP    M   G
Sbjct:  432 DNEEQNVGIRVALRAMEAPIRQITKNAGDEDSVVANNVKAGEG-SYGYNAATGEYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKESAGMPDMGGMGGMG 542          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+E+ VG  +++RA+  PL+ I  NAG   SVV +KV     + YG+NAATG Y D++  GI+DP KV R  L+ A+S+    + ++ +V EI E +PAM  G   D  G G
Sbjct:  432 DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGN-YGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVEDKPAM--GGMPDMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+E+ VG  +++RA+  PL+ I  NAG   SVV +KV     + YG+NAATG Y D++  GI+DP KV R  L+ A+S+    + ++ +V EI E +PAM  G   D  G G
Sbjct:  432 DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGN-YGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVEDKPAM--GGMPDMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+E+ VG  +++RA+  PL+ I  NAG   SVV +KV     + YG+NAATG Y D++  GI+DP KV R  L+ A+S+    + ++ +V EI E +PAM  G   D  G G
Sbjct:  432 DNEEQNVGIALLRRAVESPLRQIVANAGDEPSVVVDKVKQGSGN-YGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVEDKPAM--GGMPDMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+E+ VG  +++RA+  PL+ I  NAG   SVV +KV     + YG+NAATG Y D++  GI+DP KV R  L+ A+S+    + ++ +V EI E +PAM  G   D  G G
Sbjct:  432 DNEEQNVGIALLRRAVEAPLRQIVANAGDEPSVVVDKVKQGSGN-YGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVEDKPAM--GGMPDMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PHOPR (60 kDa chaperonin OS=Photobacterium profundum GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -1
Query:  212 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 550
            DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y D++A GI+DPTKV R  L+ A+SVA   + ++ ++ ++    PA  A    D  G G
Sbjct:  434 DNEEQNVGIRVALRAMESPLRQIVKNAGDEDSVVANNVRAGEGN-YGYNAATGVYGDMIAMGILDPTKVTRSALQFAASVAGLMITTEAMITDM----PAKDASAMPDMGGMG 541          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = -1
Query:  242 TLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPA 556
            TL  DE K+GA +V ++L  P+K I +NAG+  +++ EK++  D+ KYGY+     Y ++  +GIIDPTKV R  L++A+S+A   L ++ +V E  + E  P MPA
Sbjct:  430 TLSGDE-KIGAQLVAKSLDAPVKQIIRNAGLEPAIIIEKIIEKDDSKYGYDVLKERYVNMFESGIIDPTKVTRSALQNAASIASMLLTTEVLVAEEPKEEKGPEMPA 535          
BLAST of DC887897 vs. ExPASy Swiss-Prot
Match: CH60_LACLS (60 kDa chaperonin OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = -1
Query:  221 KVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRXCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNS 535
            + G +IV+RAL  P++ IA NAG  GSV+ +K L S+    G+NAATG + +++  GI+DP KV R  L++A+SVA   L ++ VV    +PEPA PA  PMD S
Sbjct:  434 QTGINIVRRALEEPVRQIAANAGYEGSVIIDK-LRSEKVGTGFNAATGQWVNMIEEGIVDPAKVTRSALQNAASVAGLILTTEAVVA--NKPEPAAPAMPPMDPS 535          
The following BLAST results are available for this feature:
BLAST of DC887897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNFM8.855e-1746.0960 kDa chaperonin 2 OS=Syntrophobacter fumaroxidan... [more]
CH602_SALTO8.855e-1750.0060 kDa chaperonin 2 OS=Salinispora tropica (strain... [more]
CH601_VIBPA8.855e-1741.9660 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH60_PSEAE1.156e-1642.4860 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB1.156e-1642.4860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA81.156e-1642.4860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA71.156e-1642.4860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PHOPR1.156e-1642.4860 kDa chaperonin OS=Photobacterium profundum GN=g... [more]
CH60_PETMO1.156e-1641.1260 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_LACLS1.156e-1646.6760 kDa chaperonin OS=Lactococcus lactis subsp. cre... [more]

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Properties
Property NameValue
Genbank descriptionDC887897 EIC Citrus sinensis cDNA clone EIC1072 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887897 ID=DC887897; Name=DC887897; organism=Citrus sinensis; type=EST; length=565bp
AGAAATCATTGCAATTGTACATCTAATTGCAAATTAATACGAGCCGTACT
CTGGCAAGCTATCCTCACCAGAATCCATAAACTCTACTAAGTCNAGTAAT
TGAATTTACAAGAAGAAGAGAACCCAACGCTGTCAAACTGAAAGATAGTT
GCTATAACGAANTCAGAACCTTATTTGCTTGCCTCCCGTGACCTTGTTAA
TTAGCTTAGTATCCATATCCTGAGTTGTCCATAGGGTTACCCGCAGGCAT
AGCGGGTTCAGGCTCCTTGATCTCAACCACCACACAGTCGGACATCAAGA
AGGTTTTTGCCACCGAGGAAGCATGCTCCAAGCANCATCTAACCACCTTG
GTAGGATCAATAATTCCTGCAGCCATTAGATCTTCGTAGTTTCCAGTTGC
AGCATTGTATCCATATTTATGATTGTCACTTGAAAGCACCTTCTCGCTGA
CCACACTTCCATTAACACCGGCATTTTTGGCAATTAATTTCAGTGGGTAG
CACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTATC
AAGGGTTTCCTTAAT
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